Source:http://linkedlifedata.com/resource/pubmed/id/14770006
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rdf:type | |
lifeskim:mentions | |
pubmed:dateCreated |
2004-2-10
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pubmed:abstractText |
Removal of the 5' cap from a messenger RNA (mRNA) is an integral part of all mRNA decay pathways and can be a highly regulated event. Assays designed to assess decapping in vitro need to effectively resolve four products of mRNA decay: 7meGpppG produced by 3'-5' shortening of the transcript by the exosome, 7meGMP produced by the scavenger decapping enzyme DcpS acting on the product of exosomal decay, 7meGDP produced by the Dcp1/2 decapping enzyme, and free phosphate, which can be generated by phosphatases in the extract acting upon either of the two products of decapping noted above. We have outlined both thin-layer chromatography and acrylamide-gel based approaches that can be used to assess decapping activities.
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pubmed:grant | |
pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:chemical | |
pubmed:status |
MEDLINE
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pubmed:issn |
1064-3745
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pubmed:author | |
pubmed:issnType |
Print
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pubmed:volume |
257
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
181-92
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pubmed:dateRevised |
2008-11-4
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pubmed:meshHeading |
pubmed-meshheading:14770006-Chromatography, Thin Layer,
pubmed-meshheading:14770006-Electrophoresis, Polyacrylamide Gel,
pubmed-meshheading:14770006-Endoribonucleases,
pubmed-meshheading:14770006-HeLa Cells,
pubmed-meshheading:14770006-Humans,
pubmed-meshheading:14770006-Peptide Chain Initiation, Translational,
pubmed-meshheading:14770006-Protein Biosynthesis,
pubmed-meshheading:14770006-RNA, Messenger,
pubmed-meshheading:14770006-RNA Caps,
pubmed-meshheading:14770006-Ribosomes
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pubmed:year |
2004
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pubmed:articleTitle |
Assessing messenger RNA decapping in cellular extracts.
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pubmed:affiliation |
Department of Microbiology and Molecular Genetics, UMDNJ-New Jersey Medical School, Newark, NJ, USA.
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pubmed:publicationType |
Journal Article,
Research Support, U.S. Gov't, P.H.S.
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