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rdf:type |
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lifeskim:mentions |
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pubmed:issue |
Database issue
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pubmed:dateCreated |
2003-12-18
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pubmed:abstractText |
The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, experimentally defined by a transcription start site (TSS). There may be multiple promoter entries for a single gene. The underlying experimental evidence comes from journal articles and, starting from release 73, from 5' ESTs of full-length cDNA clones used for so-called in silico primer extension. Access to promoter sequences is provided by pointers to TSS positions in nucleotide sequence entries. The annotation part of an EPD entry includes a description of the type and source of the initiation site mapping data, links to other biological databases and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis. Web-based interfaces have been developed that enable the user to view EPD entries in different formats, to select and extract promoter sequences according to a variety of criteria and to navigate to related databases exploiting different cross-references. Tools for analysing sequence motifs around TSSs defined in EPD are provided by the signal search analysis server. EPD can be accessed at http://www.epd. isb-sib.ch.
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pubmed:commentsCorrections |
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-10592171,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-10592254,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-11471238,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-11752283,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-11752328,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-12176937,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-12477932,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-12519942,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-12824379,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-12824417,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-14681469,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-14681477,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-2329577,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-3441006,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-3808945,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-7937042,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-8743681,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-9314492,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-9399872,
http://linkedlifedata.com/resource/pubmed/commentcorrection/14681364-9847211
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pubmed:language |
eng
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pubmed:journal |
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pubmed:citationSubset |
IM
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pubmed:chemical |
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pubmed:status |
MEDLINE
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pubmed:month |
Jan
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pubmed:issn |
1362-4962
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pubmed:author |
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pubmed:issnType |
Electronic
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pubmed:day |
1
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pubmed:volume |
32
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
D82-5
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pubmed:dateRevised |
2009-11-18
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pubmed:meshHeading |
pubmed-meshheading:14681364-Animals,
pubmed-meshheading:14681364-Base Sequence,
pubmed-meshheading:14681364-Computational Biology,
pubmed-meshheading:14681364-DNA, Complementary,
pubmed-meshheading:14681364-DNA Primers,
pubmed-meshheading:14681364-Databases, Nucleic Acid,
pubmed-meshheading:14681364-Eukaryotic Cells,
pubmed-meshheading:14681364-Expressed Sequence Tags,
pubmed-meshheading:14681364-Humans,
pubmed-meshheading:14681364-Internet,
pubmed-meshheading:14681364-Promoter Regions, Genetic,
pubmed-meshheading:14681364-Response Elements,
pubmed-meshheading:14681364-User-Computer Interface
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pubmed:year |
2004
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pubmed:articleTitle |
The Eukaryotic Promoter Database EPD: the impact of in silico primer extension.
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pubmed:affiliation |
Swiss Institute of Bioinformatics, Ch. des Boveresses 155, 1066 Epalinges s/Lausanne, Switzerland.
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pubmed:publicationType |
Journal Article,
Research Support, Non-U.S. Gov't
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