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PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
5
pubmed:dateCreated
2003-10-13
pubmed:databankReference
pubmed:abstractText
With the goal of the genetic characterization of the D-xylose pathway in Hypocrea jecorina (anamorph: Trichoderma reesei), we cloned the xdh1 gene, encoding NAD-xylitol dehydrogenase, which catalyzes the second step of fungal D-xylose catabolism. This gene encodes a 363-amino-acid protein which has a mass of 38 kDa, belongs to the zinc-containing alcohol dehydrogenase family, exhibits high sequence identity to the published sequences of xylitol dehydrogenases from yeast origins, but contains a second, additional binding site for Zn2+. The enzyme catalyzed the NAD-dependent oxidation of xylitol and D-sorbitol and the NADH-dependent reduction of D-xylulose and D-fructose. No activity was observed with NADP, L-arabinose, or L-arabinitol. A single 1.4-kb transcript was formed during growth on xylan, D-xylose, L-arabinose, L-arabinitol and, at a lower abundance, xylitol, D-galactose, galactitol, and lactose but not on D-glucose and glycerol. xdh1 deletion mutants exhibited 50% reduced growth rates on D-xylose, whereas growth rates on xylitol remained unaltered. These mutants contained 30% of the xylitol dehydrogenase activity of the parent strain, indicating the presence of a second xylitol dehydrogenase. This activity was shown to be due to lad1-encoded L-arabinitol-4-dehydrogenase, because H. jecorina xdh1 lad1 double-deletion strains failed to grow on D-xylose or xylitol. In contrast, lad1 deletion strains of H. jecorina grew normally on these carbon sources. These results show that H. jecorina contains a single xylitol dehydrogenase which is encoded by xdh1 and is involved in the metabolism of D-xylose and that lad1-encoded L-arabinitol-4-dehydrogenase can compensate for it partially in mutants with a loss of xdh1 function.
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-10486580, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-10503078, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-10533434, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-10661867, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-10760176, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-11514550, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-11606204, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-11919723, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-12536250, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-12582132, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-14249101, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-2127555, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-2231712, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-2245476, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-2849754, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-8082210, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-8504864, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-9466262, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-9758775, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-9806889, http://linkedlifedata.com/resource/pubmed/commentcorrection/14555469-9850420
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Oct
pubmed:issn
1535-9778
pubmed:author
pubmed:issnType
Print
pubmed:volume
2
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
867-75
pubmed:dateRevised
2009-11-18
pubmed:meshHeading
pubmed-meshheading:14555469-Amino Acid Sequence, pubmed-meshheading:14555469-Blotting, Northern, pubmed-meshheading:14555469-Blotting, Southern, pubmed-meshheading:14555469-Cloning, Molecular, pubmed-meshheading:14555469-D-Xylulose Reductase, pubmed-meshheading:14555469-Gene Deletion, pubmed-meshheading:14555469-Gene Expression Regulation, Enzymologic, pubmed-meshheading:14555469-Gene Expression Regulation, Fungal, pubmed-meshheading:14555469-Glycerol, pubmed-meshheading:14555469-Hexoses, pubmed-meshheading:14555469-Hypocrea, pubmed-meshheading:14555469-Kinetics, pubmed-meshheading:14555469-L-Iditol 2-Dehydrogenase, pubmed-meshheading:14555469-Molecular Sequence Data, pubmed-meshheading:14555469-Pentoses, pubmed-meshheading:14555469-Phylogeny, pubmed-meshheading:14555469-Sequence Alignment, pubmed-meshheading:14555469-Sequence Analysis, DNA, pubmed-meshheading:14555469-Sorbitol, pubmed-meshheading:14555469-Substrate Specificity, pubmed-meshheading:14555469-Sugar Alcohol Dehydrogenases, pubmed-meshheading:14555469-Xylitol, pubmed-meshheading:14555469-Xylose
pubmed:year
2003
pubmed:articleTitle
D-xylose metabolism in Hypocrea jecorina: loss of the xylitol dehydrogenase step can be partially compensated for by lad1-encoded L-arabinitol-4-dehydrogenase.
pubmed:affiliation
Abteilung für Angewandte Biochemie und Gentechnologie, Institut für Verfahrenstechnik, Umwelttechnik, und Technische Biowissenschaften, A-1060 Wien, Austria. bseiboth@mail.zserv.tuwien.ac.at
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't