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PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
3
pubmed:dateCreated
2003-8-28
pubmed:abstractText
The calcium-binding protein isolated from the sarcoplasm of the muscles of the sand worm Nereis diversicolor has four EF-hands and three active binding sites for Ca(2+) or Mg(2+). Nereis diversicolor sarcoplasmic calcium-binding protein contains three tryptophan residues at positions 4, 57, and 170, respectively. The Wt protein shows a very limited fluorescence increase upon binding of Ca(2+) or Mg(2+). Single-tryptophan-containing mutants were produced and purified. The fluorescence titrations of these mutants show a limited decrease of the affinity for calcium, but no alterations of the cooperativity. Upon adding calcium, Trp170 shows a strong fluorescence increase, Trp57 an extensive fluorescence decrease, and Trp4 shows no fluorescence change. Therefore mutant W4F/W170F is ideally suited to analyze the fluorescence titrations and to study the binding mechanism. Mutations of the calcium ligands at the z-position in the three binding sites show no effect at site I and a total loss of cooperativity at sites III and IV. The quenching of Trp57 upon calcium binding is dependent on the presence of arginine R25, but this residue is not just a simple dynamic quencher. The role of the salt bridge R25-D58 is also investigated.
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-10584070, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-10842334, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-11045710, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-11161110, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-11325713, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-12071955, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-1390680, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-1511682, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-1595904, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-1642895, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-1988017, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-2007407, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-2199796, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-2229043, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-2747529, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-2831502, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-3170587, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-3537305, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-3814586, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-6849881, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-7025898, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-7260284, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-7295685, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-8140089, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-8443179, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-8762142, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-8849695, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-896960, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-9170312, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-9665702, http://linkedlifedata.com/resource/pubmed/commentcorrection/12944301-9862132
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Sep
pubmed:issn
0006-3495
pubmed:author
pubmed:issnType
Print
pubmed:volume
85
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
1882-93
pubmed:dateRevised
2009-11-18
pubmed:meshHeading
pubmed-meshheading:12944301-Aminoquinolines, pubmed-meshheading:12944301-Animals, pubmed-meshheading:12944301-Anisotropy, pubmed-meshheading:12944301-Annelida, pubmed-meshheading:12944301-Arginine, pubmed-meshheading:12944301-Base Sequence, pubmed-meshheading:12944301-Binding Sites, pubmed-meshheading:12944301-Calcium, pubmed-meshheading:12944301-Calcium-Binding Proteins, pubmed-meshheading:12944301-Dose-Response Relationship, Drug, pubmed-meshheading:12944301-Egtazic Acid, pubmed-meshheading:12944301-Escherichia coli, pubmed-meshheading:12944301-Kinetics, pubmed-meshheading:12944301-Magnesium, pubmed-meshheading:12944301-Models, Molecular, pubmed-meshheading:12944301-Models, Statistical, pubmed-meshheading:12944301-Molecular Sequence Data, pubmed-meshheading:12944301-Mutagenesis, Site-Directed, pubmed-meshheading:12944301-Protein Conformation, pubmed-meshheading:12944301-Sarcoplasmic Reticulum, pubmed-meshheading:12944301-Spectrometry, Fluorescence, pubmed-meshheading:12944301-Time Factors, pubmed-meshheading:12944301-Tryptophan, pubmed-meshheading:12944301-Ultraviolet Rays
pubmed:year
2003
pubmed:articleTitle
Mechanism of fluorescence and conformational changes of the sarcoplasmic calcium binding protein of the sand worm Nereis diversicolor upon Ca2+ or Mg2+ binding.
pubmed:affiliation
Laboratory of Biomolecular Dynamics, Catholic University of Leuven, Belgium.
pubmed:publicationType
Journal Article
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