Linked Life Data

12799356

Source:http://linkedlifedata.com/resource/pubmed/id/12799356

Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
6A
pubmed:dateCreated
2003-6-11
pubmed:abstractText
Fingerprinted clone physical maps have proven useful in various applications, supporting both whole-genome and region-specific DNA sequencing as well as gene cloning studies. Fingerprint maps have been generated for several genomes, including those of human, mouse, rat, the nematodes Caenorhabditis elegans and Caenorhabditis briggsae, Arabidopsis thaliana and rice. Fingerprint maps of other genomes, including those of fungi, bacteria, poplar, and the cow, are being generated. The increasing use of fingerprint maps in genomic research has spawned a need in the research community for intuitive computer tools that facilitate viewing of the maps and the underlying fingerprint data. In this report we describe a new Java-based application called iCE (Internet Contig Explorer) that has been designed to provide views of fingerprint maps and associated data. Users can search for and display individual clones, contigs, clone fingerprints, clone insert sizes and markers. Users can also load into the software lists of particular clones of interest and view their fingerprints. iCE is being used at our Genome Centre to offer up to the research community views of the mouse, rat, bovine, C. briggsae, and several fungal genome bacterial artificial chromosome (BAC) fingerprint maps we have either completed or are currently constructing. We are also using iCE as part of the Rat Genome Sequencing Project to manage our provision of rat BAC clones for sequencing at the Human Genome Sequencing Center at the Baylor College of Medicine.
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-10391214, http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-10447509, http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-10854411, http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-10899147, http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-11237014, http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-11788746, http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-12181558, http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-1953703, http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-2838135, http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-3463999, http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-9367125, http://linkedlifedata.com/resource/pubmed/commentcorrection/12799356-9371743
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Jun
pubmed:issn
1088-9051
pubmed:author
pubmed:issnType
Print
pubmed:volume
13
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
1244-9
pubmed:dateRevised
2009-11-18
pubmed:meshHeading
pubmed:year
2003
pubmed:articleTitle
Internet Contig Explorer (iCE)--a tool for visualizing clone fingerprint maps.
pubmed:affiliation
Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z 4E6, Canada.
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't