|
rdf:type |
|
|
lifeskim:mentions |
|
|
pubmed:issue |
1
|
|
pubmed:dateCreated |
2003-6-4
|
|
pubmed:abstractText |
We present an evaluation of our results for the first Critical Assessment of PRedicted Interaction (CAPRI). The methods used include the molecular docking program DOT, shape analysis tool FADE, cluster analysis and filtering based on biological data. Good results were obtained for most of the seven CAPRI targets, and for two systems, submissions having the highest number of correctly predicted contacts were produced.
|
|
pubmed:language |
eng
|
|
pubmed:journal |
|
|
pubmed:citationSubset |
IM
|
|
pubmed:chemical |
http://linkedlifedata.com/resource/pubmed/chemical/Antigens, Viral,
http://linkedlifedata.com/resource/pubmed/chemical/Bacterial Proteins,
http://linkedlifedata.com/resource/pubmed/chemical/Capsid Proteins,
http://linkedlifedata.com/resource/pubmed/chemical/Exotoxins,
http://linkedlifedata.com/resource/pubmed/chemical/HPr kinase,
http://linkedlifedata.com/resource/pubmed/chemical/Hemagglutinins,
http://linkedlifedata.com/resource/pubmed/chemical/Immunoglobulin Fab Fragments,
http://linkedlifedata.com/resource/pubmed/chemical/Immunoglobulin Variable Region,
http://linkedlifedata.com/resource/pubmed/chemical/Macromolecular Substances,
http://linkedlifedata.com/resource/pubmed/chemical/Phosphoenolpyruvate Sugar...,
http://linkedlifedata.com/resource/pubmed/chemical/Protein-Serine-Threonine Kinases,
http://linkedlifedata.com/resource/pubmed/chemical/Proteins,
http://linkedlifedata.com/resource/pubmed/chemical/Receptors, Antigen, T-Cell...,
http://linkedlifedata.com/resource/pubmed/chemical/VP6 protein, Rotavirus,
http://linkedlifedata.com/resource/pubmed/chemical/alpha-Amylases,
http://linkedlifedata.com/resource/pubmed/chemical/phosphocarrier protein HPr
|
|
pubmed:status |
MEDLINE
|
|
pubmed:month |
Jul
|
|
pubmed:issn |
1097-0134
|
|
pubmed:author |
|
|
pubmed:copyrightInfo |
Copyright 2003 Wiley-Liss, Inc.
|
|
pubmed:issnType |
Electronic
|
|
pubmed:day |
1
|
|
pubmed:volume |
52
|
|
pubmed:owner |
NLM
|
|
pubmed:authorsComplete |
Y
|
|
pubmed:pagination |
33-40
|
|
pubmed:dateRevised |
2008-11-21
|
|
pubmed:meshHeading |
pubmed-meshheading:12784365-Algorithms,
pubmed-meshheading:12784365-Antigens, Viral,
pubmed-meshheading:12784365-Bacterial Proteins,
pubmed-meshheading:12784365-Binding Sites,
pubmed-meshheading:12784365-Capsid Proteins,
pubmed-meshheading:12784365-Cluster Analysis,
pubmed-meshheading:12784365-Exotoxins,
pubmed-meshheading:12784365-Hemagglutinins,
pubmed-meshheading:12784365-Immunoglobulin Fab Fragments,
pubmed-meshheading:12784365-Immunoglobulin Variable Region,
pubmed-meshheading:12784365-Macromolecular Substances,
pubmed-meshheading:12784365-Models, Molecular,
pubmed-meshheading:12784365-Molecular Structure,
pubmed-meshheading:12784365-Phosphoenolpyruvate Sugar Phosphotransferase System,
pubmed-meshheading:12784365-Protein Interaction Mapping,
pubmed-meshheading:12784365-Protein-Serine-Threonine Kinases,
pubmed-meshheading:12784365-Proteins,
pubmed-meshheading:12784365-Receptors, Antigen, T-Cell, alpha-beta,
pubmed-meshheading:12784365-Static Electricity,
pubmed-meshheading:12784365-alpha-Amylases
|
|
pubmed:year |
2003
|
|
pubmed:articleTitle |
Finding needles in haystacks: Reranking DOT results by using shape complementarity, cluster analysis, and biological information.
|
|
pubmed:affiliation |
San Diego Supercomputer Center, University of California at San Diego, La Jolla 92093-0527, USA.
|
|
pubmed:publicationType |
Journal Article,
Research Support, U.S. Gov't, Non-P.H.S.,
Research Support, Non-U.S. Gov't,
Evaluation Studies
|
