Source:http://linkedlifedata.com/resource/pubmed/id/12761068
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Predicate | Object |
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rdf:type | |
lifeskim:mentions | |
pubmed:issue |
8
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pubmed:dateCreated |
2003-5-22
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pubmed:abstractText |
Summary: Zerg is a library of sub-routines that parses the output from all NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn and Tblastx) and returns the attributes of a BLAST report to the user. It is optimized for speed, being especially useful for large-scale genomic analysis. Benchmark tests show that Zerg is over two orders of magnitude faster than some widely used BLAST parsers. AVAILABILITY: http://bioinfo.iq.usp.br/zerg
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pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:status |
MEDLINE
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pubmed:month |
May
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pubmed:issn |
1367-4803
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pubmed:author | |
pubmed:issnType |
Print
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pubmed:day |
22
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pubmed:volume |
19
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
1035-6
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pubmed:dateRevised |
2006-11-15
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pubmed:meshHeading |
pubmed-meshheading:12761068-Database Management Systems,
pubmed-meshheading:12761068-Databases, Nucleic Acid,
pubmed-meshheading:12761068-National Library of Medicine (U.S.),
pubmed-meshheading:12761068-Sequence Alignment,
pubmed-meshheading:12761068-Sequence Analysis, DNA,
pubmed-meshheading:12761068-Software,
pubmed-meshheading:12761068-United States,
pubmed-meshheading:12761068-User-Computer Interface
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pubmed:year |
2003
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pubmed:articleTitle |
Zerg: a very fast BLAST parser library.
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pubmed:affiliation |
Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo 05508-900, São Paulo, SP, Brazil. verjo@iq.usp.br
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pubmed:publicationType |
Journal Article,
Comparative Study,
Research Support, Non-U.S. Gov't,
Evaluation Studies,
Validation Studies
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