Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
21
pubmed:dateCreated
2002-10-31
pubmed:abstractText
A unique DNA curvature, the CIT, has been found in the 5'-upstream region of the psbA2 gene, which exhibits basal, light-responsive and circadian rhythmic transcription, in a unicellular photosynthetic cyanobacterium, Microcystis aeruginosa K-81. In this study, we report the universality of curvatures found in 5'-upstream regions in the psbA family and the function of the curvature in gene expression. Intrinsic curvatures were identified within 1000 bp upstream from the psbA genes in another cyanobacterium, a red alga and in plants (monocot and dicot). Mutagenized curvatures were constructed and confirmed to have disrupted architecture by gel electrophoresis and atomic force microscopy. Relatively small amounts but light-responsive transcripts of psbA2 were observed in cyanobacterial transformants harboring the mutagenized curvature under light/dark and light/high-light conditions. This shows that the curvature is important for basal transcription. In vitro primer extension and DNA mobility shift assay revealed that factors which might bind to the region upstream from the bending center contribute to the effective basal transcription of psbA2.
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-10050033, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-10082653, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-11328866, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-11494319, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-12172808, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-1579106, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-1579452, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-16453578, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-2404609, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-2500419, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-2512122, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-2543669, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-2995831, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-3029673, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-3051380, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-3309341, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-3418695, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-3881765, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-6323997, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-6425267, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-7500334, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-8063755, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-8078436, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-8248780, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-8265608, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-8910380, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-8947837, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-8973333, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-9037772, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-9632827, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-9776739, http://linkedlifedata.com/resource/pubmed/commentcorrection/12409456-9804976
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Nov
pubmed:issn
1362-4962
pubmed:author
pubmed:issnType
Electronic
pubmed:day
1
pubmed:volume
30
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
4658-66
pubmed:dateRevised
2010-9-14
pubmed:meshHeading
pubmed-meshheading:12409456-5' Flanking Region, pubmed-meshheading:12409456-Base Sequence, pubmed-meshheading:12409456-Cyanobacteria, pubmed-meshheading:12409456-DNA, pubmed-meshheading:12409456-DNA-Binding Proteins, pubmed-meshheading:12409456-Electrophoretic Mobility Shift Assay, pubmed-meshheading:12409456-Gene Expression Regulation, Bacterial, pubmed-meshheading:12409456-Genes, Bacterial, pubmed-meshheading:12409456-Light, pubmed-meshheading:12409456-Microscopy, Atomic Force, pubmed-meshheading:12409456-Molecular Sequence Data, pubmed-meshheading:12409456-Mutagenesis, pubmed-meshheading:12409456-Nucleic Acid Conformation, pubmed-meshheading:12409456-Photosynthesis, pubmed-meshheading:12409456-Photosynthetic Reaction Center Complex Proteins, pubmed-meshheading:12409456-Photosystem II Protein Complex, pubmed-meshheading:12409456-Protein Binding, pubmed-meshheading:12409456-RNA, Bacterial, pubmed-meshheading:12409456-RNA, Messenger, pubmed-meshheading:12409456-Transcription, Genetic
pubmed:year
2002
pubmed:articleTitle
The curved DNA structure in the 5'-upstream region of the light-responsive genes: its universality, binding factor and function for cyanobacterial psbA transcription.
pubmed:affiliation
Laboratory of Molecular Genetics, School of Agriculture, Ibaraki University, Ami 3-21-1, Inashiki-gun, Ibaraki 300-0332, Japan.
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't