11880628

Source:http://linkedlifedata.com/resource/pubmed/id/11880628

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Predicate	Object
rdf:type	pubmed:Citation
lifeskim:mentions	umls-concept:C0026882, umls-concept:C0033684, umls-concept:C1515568, umls-concept:C1707689, umls-concept:C1948066
pubmed:issue	5
pubmed:dateCreated	2002-3-7
pubmed:abstractText	Amyloid fibrils are associated with a variety of neurodegenerative maladies including Alzheimer's disease and the prion diseases. The structures of amyloid fibrils are composed of beta-strands oriented orthogonal to the fibril axis ("cross beta" structure). We previously reported the design and characterization of a combinatorial library of de novo beta-sheet proteins that self-assemble into fibrillar structures resembling amyloid. The libraries were designed by using a "binary code" strategy, in which the locations of polar and nonpolar residues are specified explicitly, but the identities of these residues are not specified and are varied combinatorially. The initial libraries were designed to encode proteins containing amphiphilic beta-strands separated by reverse turns. Each beta-strand was designed to be seven residues long, with polar (open circle) and nonpolar (shaded circle) amino acids arranged with an alternating periodicity ([see text]). The initial design specified the identical polar/nonpolar pattern for all of the beta-strands; no strand was explicitly designated to form the edges of the resulting beta-sheets. With all beta-strands preferring to occupy interior (as opposed to edge) locations, intermolecular oligomerization was favored, and the proteins assembled into amyloid-like fibrils. To assess whether explicit design of edge-favoring strands might tip the balance in favor of monomeric beta-sheet proteins, we have now redesigned the first and/or last beta-strands of several sequences from the original library. In the redesigned beta-strands, the binary pattern is changed from [see text] (K denotes lysine). The presence of a lysine on the nonpolar face of a beta-strand should disfavor fibrillar structures because such structures would bury an uncompensated charge. The nonpolar right arrow lysine mutations, therefore, would be expected to favor monomeric structures in which the [see text] sequences form edge strands with the charged lysine side chain accessible to solvent. To test this hypothesis, we constructed several second generation sequences in which the central nonpolar residue of either the N-terminal beta-strand or the C-terminal beta-strand (or both) is changed to lysine. Characterization of the redesigned proteins shows that they form monomeric beta-sheet proteins.
pubmed:commentsCorrections	http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-10211831, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-10500156, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-10686095, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-10769115, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-11274383, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-11456855, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-11583155, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-11880627, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-1477272, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-2392678, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-4066779, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-7603994, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-7682699, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-8259512, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-8535239, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-8553067, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-9311930, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-9338080, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-9416601, http://linkedlifedata.com/resource/pubmed/commentcorrection/11880628-9657719
pubmed:language	eng
pubmed:journal	http://linkedlifedata.com/resource/pubmed/journal/7505876
pubmed:citationSubset	IM
pubmed:chemical	http://linkedlifedata.com/resource/pubmed/chemical/Amyloid, http://linkedlifedata.com/resource/pubmed/chemical/Oligopeptides
pubmed:status	MEDLINE
pubmed:month	Mar
pubmed:issn	0027-8424
pubmed:author	pubmed-author:HechtMichael HMH, pubmed-author:WangWeixunW
pubmed:issnType	Print
pubmed:day	5
pubmed:volume	99
pubmed:owner	NLM
pubmed:authorsComplete	Y
pubmed:pagination	2760-5
pubmed:dateRevised	2009-11-18
pubmed:meshHeading	pubmed-meshheading:11880628-Amino Acid Sequence, pubmed-meshheading:11880628-Amyloid, pubmed-meshheading:11880628-Models, Molecular, pubmed-meshheading:11880628-Molecular Sequence Data, pubmed-meshheading:11880628-Mutagenesis, pubmed-meshheading:11880628-Oligopeptides, pubmed-meshheading:11880628-Protein Structure, Secondary, pubmed-meshheading:11880628-Solubility
pubmed:year	2002
pubmed:articleTitle	Rationally designed mutations convert de novo amyloid-like fibrils into monomeric beta-sheet proteins.
pubmed:affiliation	Department of Chemistry, Princeton University, Princeton, NJ 08544-1009, USA.
pubmed:publicationType	Journal Article, Research Support, U.S. Gov't, Non-P.H.S.