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rdf:type |
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lifeskim:mentions |
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pubmed:issue |
1
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pubmed:dateCreated |
2001-12-25
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pubmed:abstractText |
An extensive effort of the International Rice Genome Sequencing Project (IRGSP) has resulted in rapid accumulation of genome sequence, and >137 Mb has already been made available to the public domain as of August 2001. This requires a high-throughput annotation scheme to extract biologically useful and timely information from the sequence data on a regular basis. A new automated annotation system and database called Rice Genome Automated Annotation System (RiceGAAS) has been developed to execute a reliable and up-to-date analysis of the genome sequence as well as to store and retrieve the results of annotation. The system has the following functional features: (i) collection of rice genome sequences from GenBank; (ii) execution of gene prediction and homology search programs; (iii) integration of results from various analyses and automatic interpretation of coding regions; (iv) re-execution of analysis, integration and automatic interpretation with the latest entries in reference databases; (v) integrated visualization of the stored data using web-based graphical view. RiceGAAS also has a data submission mechanism that allows public users to perform fully automated annotation of their own sequences. The system can be accessed at http://RiceGAAS.dna.affrc.go.jp/.
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pubmed:commentsCorrections |
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pubmed:language |
eng
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pubmed:journal |
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pubmed:citationSubset |
IM
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pubmed:chemical |
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pubmed:status |
MEDLINE
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pubmed:month |
Jan
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pubmed:issn |
1362-4962
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pubmed:author |
pubmed-author:AntonioBaltazar ABA,
pubmed-author:HigoKenichiK,
pubmed-author:HoriuchiIkuoI,
pubmed-author:IdonumaAtsukoA,
pubmed-author:MatsumotoTakashiT,
pubmed-author:NagamuraYoshiakiY,
pubmed-author:NagasakiHidekiH,
pubmed-author:NumaHisatakaH,
pubmed-author:SakataKatsumiK,
pubmed-author:SasakiTakujiT,
pubmed-author:ShimizuYujiY,
pubmed-author:WatanabeWakakoW
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pubmed:issnType |
Electronic
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pubmed:day |
1
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pubmed:volume |
30
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
98-102
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pubmed:dateRevised |
2009-11-18
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pubmed:meshHeading |
pubmed-meshheading:11752265-Automation,
pubmed-meshheading:11752265-Computer Graphics,
pubmed-meshheading:11752265-DNA, Plant,
pubmed-meshheading:11752265-Database Management Systems,
pubmed-meshheading:11752265-Databases, Genetic,
pubmed-meshheading:11752265-Databases, Nucleic Acid,
pubmed-meshheading:11752265-Forecasting,
pubmed-meshheading:11752265-Genes, Plant,
pubmed-meshheading:11752265-Genome, Plant,
pubmed-meshheading:11752265-Information Storage and Retrieval,
pubmed-meshheading:11752265-Internet,
pubmed-meshheading:11752265-Oryza sativa,
pubmed-meshheading:11752265-Plant Proteins,
pubmed-meshheading:11752265-Sequence Analysis, DNA,
pubmed-meshheading:11752265-Sequence Homology
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pubmed:year |
2002
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pubmed:articleTitle |
RiceGAAS: an automated annotation system and database for rice genome sequence.
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pubmed:affiliation |
National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan. ksakata@nias.affrc.go.jp
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pubmed:publicationType |
Journal Article,
Research Support, Non-U.S. Gov't
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