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PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
11
pubmed:dateCreated
2001-1-9
pubmed:abstractText
Calbindin D28k is a highly conserved Ca2+-binding protein abundant in brain and sensory neurons. The 261-residue protein contains six EF-hands packed into one globular domain. In this study, we have reconstituted calbindin D28k from two fragments containing three EF-hands each (residues 1-132 and 133-261, respectively), and from other combinations of small and large fragments. Complex formation is studied by ion-exchange and size-exclusion chromatography, electrophoresis, surface plasmon resonance, as well as circular dichroism (CD), fluorescence, and NMR spectroscopy. Similar chromatographic behavior to the native protein is observed for reconstituted complexes formed by mixing different sets of complementary fragments, produced by introducing a cut between EF-hands 1, 2, 3, or 4. The C-terminal half (residues 133-261) appears to have a lower intrinsic stability compared to the N-terminal half (residues 1-132). In the presence of Ca2+, NMR spectroscopy reveals a high degree of structural similarity between the intact protein and the protein reconstituted from the 1-132 and 133-261 fragments. The affinity between these two fragments is 2 x 10(7) M(-1), with association and dissociation rate constants of 2.7 x 10(4) M(-1) s(-1) and 1.4 x 10(-3) s(-1), respectively. The complex formed in the presence of Ca2+ is remarkably stable towards unfolding by urea and heat. Both the complex and intact protein display cold and heat denaturation, although residual alpha-helical structure is seen in the urea denatured state at high temperature. In the absence of Ca2+, the fragments do not recombine to yield a complex resembling the intact apo protein. Thus, calbindin D28k is an example of a protein that can only be reconstituted in the presence of bound ligand. The alpha-helical CD signal is increased by 26% after addition of Ca2+ to each half of the protein. This suggests that Ca2+-induced folding of the fragments is important for successful reconstitution of calbindin D28k.
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-10092486, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-10191495, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-10411658, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-10841767, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-1390738, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-1429621, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-1474585, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-1544446, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-1560459, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-16590160, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-1736361, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-1751488, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-1898866, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-1902469, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-209037, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-2217161, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-2374927, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-3474624, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-3773758, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-3783710, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-3792310, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-391270, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-391271, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-4029146, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-4332553, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-4352194, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-4700463, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-6243298, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-6281788, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-6825857, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-7675785, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-7823837, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-8214588, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-8242744, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-8265657, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-8318885, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-8318902, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-8443179, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-8619985, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-8745410, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-9228945, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-9228946, http://linkedlifedata.com/resource/pubmed/commentcorrection/11152121-9385641
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Nov
pubmed:issn
0961-8368
pubmed:author
pubmed:issnType
Print
pubmed:volume
9
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
2094-108
pubmed:dateRevised
2009-11-18
pubmed:meshHeading
pubmed-meshheading:11152121-Amino Acid Sequence, pubmed-meshheading:11152121-Animals, pubmed-meshheading:11152121-Base Sequence, pubmed-meshheading:11152121-Calcium-Binding Protein, Vitamin D-Dependent, pubmed-meshheading:11152121-Chickens, pubmed-meshheading:11152121-Chromatography, Gel, pubmed-meshheading:11152121-Chromatography, Ion Exchange, pubmed-meshheading:11152121-Circular Dichroism, pubmed-meshheading:11152121-Disulfides, pubmed-meshheading:11152121-Electrophoresis, Agar Gel, pubmed-meshheading:11152121-Electrophoresis, Polyacrylamide Gel, pubmed-meshheading:11152121-Hot Temperature, pubmed-meshheading:11152121-Humans, pubmed-meshheading:11152121-Kinetics, pubmed-meshheading:11152121-Magnetic Resonance Spectroscopy, pubmed-meshheading:11152121-Molecular Sequence Data, pubmed-meshheading:11152121-Protein Binding, pubmed-meshheading:11152121-Protein Conformation, pubmed-meshheading:11152121-Protein Denaturation, pubmed-meshheading:11152121-Protein Structure, Tertiary, pubmed-meshheading:11152121-Recombinant Proteins, pubmed-meshheading:11152121-Sequence Homology, Amino Acid, pubmed-meshheading:11152121-Spectrometry, Fluorescence, pubmed-meshheading:11152121-Surface Plasmon Resonance, pubmed-meshheading:11152121-Temperature, pubmed-meshheading:11152121-Ultraviolet Rays, pubmed-meshheading:11152121-Urea
pubmed:year
2000
pubmed:articleTitle
Fragment complementation of calbindin D28k.
pubmed:affiliation
Physical Chemistry 2, Chemical Center, University of Lund, Sweden.
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