Linked Life Data

11125081

Source:http://linkedlifedata.com/resource/pubmed/id/11125081

Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
1
pubmed:dateCreated
2001-1-4
pubmed:abstractText
The tmRNA database (tmRDB) is maintained at the University of Texas Health Science Center at Tyler, Texas, and accessible on the World Wide Web at the URL http://psyche.uthct.edu/dbs/tmRDB/tmRDB.++ +html. Mirror sites are located at Auburn University, Auburn, Alabama (http://www.ag.auburn.edu/mirror/tmRDB/) and the Institute of Biological Sciences, Aarhus, Denmark (http://www.bioinf.au. dk/tmRDB/). The tmRDB provides information and citation links about tmRNA, a molecule that combines functions of tRNA and mRNA in trans-translation. tmRNA is likely to be present in all bacteria and has been found in algae chloroplasts, the cyanelle of Cyanophora paradoxa and the mitochondrion of the flagellate Reclinomonas americana. This release adds 26 new sequences and corresponding predicted tmRNA-encoded tag peptides for a total of 86 tmRNAs, ordered alphabetically and phylogenetically. Secondary structures and three-dimensional models in PDB format for representative molecules are being made available. tmRNA alignments prove individual base pairs and are generated manually assisted by computational tools. The alignments with their corresponding structural annotation can be obtained in various formats, including a new column format designed to improve and simplify computational usability of the data.
pubmed:grant
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-10219077, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-10393194, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-10461380, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-10592170, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-10592213, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-10592214, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-10881189, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-10884408, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-1707519, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-3382986, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-8584937, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-8721993, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-8972778, http://linkedlifedata.com/resource/pubmed/commentcorrection/11125081-9573050
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Jan
pubmed:issn
1362-4962
pubmed:author
pubmed:issnType
Electronic
pubmed:day
1
pubmed:volume
29
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
171-2
pubmed:dateRevised
2009-11-18
pubmed:meshHeading
pubmed:year
2001
pubmed:articleTitle
tmRDB (tmRNA database).
pubmed:affiliation
Department of Genetics and Ecology, The Institute of Biological Sciences, University of Aarhus, Building 540, Ny Munkegade, DK-8000 Aarhus C, Denmark.
pubmed:publicationType
Journal Article, Research Support, U.S. Gov't, P.H.S., Research Support, Non-U.S. Gov't