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pubmed:abstractText |
We present density-functional molecular dynamics simulations of FeP(Im)(AB) heme models (AB = CO, O(2), Im = imidazole) as a way of sketching the dynamic motion of the axial ligands at room temperature. The FeP(Im)(CO) model is characterized by an essentially upright FeCO unit, undergoing small deviations with respect to its linear equilibrium structure (bending and tilting up to 10 degrees and 7 degrees, often occur). The motion of the carbon monoxide ligand is found to be quite complex and fast, its projection on the porphyrin plane sampling all the porphyrin quadrants in a short time ( approximately 0.5 ps). Simultaneously, the imidazole ligand rotates slowly around the Fe-N(epsilon) bond. In contrast to carbon monoxide, the oxygen ligand in FeP(Im)(O(2)) prefers a conformation where the projection of the O-O axis on the porphyrin plane bisects one of the porphyrin quadrants. A transition to other quadrants takes place through an O-O/Fe-N(p) overlapping conformation, within 4-6 ps. Further details of these mechanisms and their implications are discussed.
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