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PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
19
pubmed:dateCreated
1999-10-21
pubmed:abstractText
The parCBA operon of the 3.2-kb stabilization region of plasmid RK2 encodes three cotranslated proteins. ParA mediates site-specific recombination to resolve plasmid multimers, ParB has been shown to be a nuclease, and the function of ParC is unknown. In this study ParB was overexpressed by cotranslation with ParC in Escherichia coli by using a plasmid construct that contained the parC and parB genes under the control of the T7 promoter. Purification was achieved by treatment of extracts with Polymin P, followed by ammonium sulfate precipitation and heparin and ion-exchange chromatography. Sizing-column analysis indicated that ParB exists as a monomer in solution. Analysis of the enzymatic properties of purified ParB indicated that the protein preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5'-->3' exonuclease activity. This ParB activity on a 5'-end-labeled, double-stranded DNA substrate produces a 3', 5'-phosphorylated dinucleotide which is further cleaved to a 3', 5'-phosphorylated mononucleotide. The role of the ParB endonuclease and exonuclease activities in plasmid RK2 stabilization remains to be determined.
pubmed:grant
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-1324324, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-1330320, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-1508044, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-1508045, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-1560781, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-1624414, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-2121707, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-2149583, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-2164585, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-2170028, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-2172207, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-2670941, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-3023637, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-3323833, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-3537305, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-370553, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-3897195, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-395312, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-4285062, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-6169150, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-6225875, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-6307819, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-7723014, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-7751288, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-8057833, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-8126720, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-8133518, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-8133520, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-8177732, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-8411153, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-8606188, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-8631697, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-8631720, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-8918793, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-9242693, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-9245806, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-9335298, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-9350860, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-9421913, http://linkedlifedata.com/resource/pubmed/commentcorrection/10498713-9811663
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
http://linkedlifedata.com/resource/pubmed/chemical/DNA, Single-Stranded, http://linkedlifedata.com/resource/pubmed/chemical/DNA, Superhelical, http://linkedlifedata.com/resource/pubmed/chemical/DNA Topoisomerase IV, http://linkedlifedata.com/resource/pubmed/chemical/DNA Topoisomerases, Type II, http://linkedlifedata.com/resource/pubmed/chemical/Endodeoxyribonucleases, http://linkedlifedata.com/resource/pubmed/chemical/Endonucleases, http://linkedlifedata.com/resource/pubmed/chemical/Escherichia coli Proteins, http://linkedlifedata.com/resource/pubmed/chemical/Exodeoxyribonuclease V, http://linkedlifedata.com/resource/pubmed/chemical/Exodeoxyribonucleases, http://linkedlifedata.com/resource/pubmed/chemical/Exonucleases, http://linkedlifedata.com/resource/pubmed/chemical/Recombinant Proteins
pubmed:status
MEDLINE
pubmed:month
Oct
pubmed:issn
0021-9193
pubmed:author
pubmed:issnType
Print
pubmed:volume
181
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
6010-8
pubmed:dateRevised
2009-11-18
pubmed:meshHeading
pubmed-meshheading:10498713-Base Sequence, pubmed-meshheading:10498713-DNA, Single-Stranded, pubmed-meshheading:10498713-DNA, Superhelical, pubmed-meshheading:10498713-DNA Topoisomerase IV, pubmed-meshheading:10498713-DNA Topoisomerases, Type II, pubmed-meshheading:10498713-Endodeoxyribonucleases, pubmed-meshheading:10498713-Endonucleases, pubmed-meshheading:10498713-Escherichia coli, pubmed-meshheading:10498713-Escherichia coli Proteins, pubmed-meshheading:10498713-Exodeoxyribonuclease V, pubmed-meshheading:10498713-Exodeoxyribonucleases, pubmed-meshheading:10498713-Exonucleases, pubmed-meshheading:10498713-Molecular Sequence Data, pubmed-meshheading:10498713-Nucleic Acid Conformation, pubmed-meshheading:10498713-Plasmids, pubmed-meshheading:10498713-Protein Conformation, pubmed-meshheading:10498713-Recombinant Proteins, pubmed-meshheading:10498713-Substrate Specificity
pubmed:year
1999
pubmed:articleTitle
Plasmid RK2 ParB protein: purification and nuclease properties.
pubmed:affiliation
Department of Biology and Center for Molecular Genetics, University of California, San Diego, La Jolla, California 92093-0322, USA.
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