Linked Life Data
Linked Life Data is semantic data integration platform for biomedical domain.
Repository overview
| ID: | LLD 0.4.2 |
|---|---|
| Description: | Pathway and Interaction Knowledge Base |
| Number of statements: | 4,193,400,044 |
| Number of expl. statements: | 2,741,704,569 |
| Number of entities: | 582,691,283 |
Datasources overview
| Data source | Named graph | Load date | Number of statements | Instances type |
|---|---|---|---|---|
|
Disease Ontology
Reference License |
lld:diseaseontology | 25.11.2009 | 446,066 | diseaseontology:DiseaseOntologyConcept |
|
Human Phenotype Ontology
Reference License |
lld:phenotype | 25.11.2009 | 70,911 | skos:Concept |
|
Symptom Ontology
Reference License |
lld:symptom | 25.11.2009 | 4,163 | skos:Concept |
|
DrugBank
Reference License |
lld:drugbank | 25.11.2009 | 501,380 | drugbank:drugs |
|
Diseasome
Reference License |
lld:diseasome | 25.11.2009 | 69,662 | diseasome:diseases |
|
LinkedCT
Reference License |
lld:linkedct | 25.11.2009 | 7,031,859 | linkedct:condition |
|
DailyMed
Reference License |
lld:dailymed | 25.11.2009 | 116,992 | dailymed:drugs |
|
SIDER
Reference License |
lld:sider | 25.11.2009 | 98,236 | sider:drugs |
|
BioGRID
Reference License |
lld:BioGRID | 25.11.2009 | 9,454,917 | biopax-2:entity |
|
CellMap
Reference License |
lld:cell-map | 25.11.2009 | 151,788 | biopax-2:entity |
|
HPRD
Reference License |
lld:hprd | 25.11.2009 | 1,805,651 | biopax-2:entity |
|
HumanCYC
Reference License |
lld:humancyc | 25.11.2009 | 341,225 | biopax-2:entity |
|
IMID
Reference License |
lld:imid | 25.11.2009 | 154,408 | biopax-2:entity |
|
IntAct
Reference License |
lld:intact | 25.11.2009 | 11,005,555 | biopax-2:entity |
|
Reactome
Reference License |
lld:Reactome | 25.11.2009 | 839,084 | biopax-2:entity |
|
NCI-Nature
Reference License |
lld:nci-nature | 25.11.2009 | 454,876 | biopax-2:entity |
|
MINT
Reference License |
lld:mint | 25.11.2009 | 7,915,613 | biopax-2:entity |
|
LHGDN
Reference License |
lld:lhgdn | 08.03.2010 | 252,812 | lhgdn:associationId |
|
Entrez-Gene
Reference License |
lld:entrezgene | 25.11.2009 | 91,963,849 | entrezgene:Gene |
|
PubMed
Reference License |
lld:pubmed | 25.11.2009 | 984,790,252 | pubmed:Citation |
|
UniProt
Reference License |
lld:uniprot | 25.11.2009 | 1,248,932,069 | uniprot:Protein |
|
ChEBI
Reference License |
lld:chebi | 08.03.2010 | 1,378,754 | skos:Concept |
|
UMLS Metathesaurus
Reference License |
lld:umls | 25.11.2009 | 18,243,074 | skos:Concept |
|
UMLS Semantic network
Reference License |
lld:umls | 25.11.2009 | 1,368 | skos:Concept |
|
DBpedia
Reference License |
lld:dbpedia | 25.11.2009 | 345,652,000 | rdfs:Resource |
Mappings overview
| Source dataset | Destination dataset | Linked Data Mapping Rule | Number of connections | Semantic relationship |
|---|---|---|---|---|
| BioPax proteins | Entrez Gene | Reference Node | 29,609 | skos:closeMatch |
| BioPax proteins | UMLS concepts (GO) | Reference Node | 45,023 | skos:relatedMatch |
| BioPax proteins | UniProt | Reference Node | 108,548 | skos:exactMatch |
| Diseasome genes | EntrezGene | Mismatched Identifiers | 2,771 | skos:closeMatch |
| EntrezGene GO terms | UMLS concepts (GO) | Mismatched Identifiers | 27,943 | skos:exactMatch |
| EntrezGene organisms | UMLS concepts (NCBI Taxonomy) | Mismatched Identifiers | 4,218 | skos:exactMatch |
| UniProt GO terms | UMLS concepts (GO) | Mismatched Identifiers | 49,472 | skos:exactMatch |
| DrugBank targets | Entrez Gene | Value Dereference | 1,514 | skos:closeMatch |
| EntrezGene | DBpedia | Mismatched Identifiers | 1,525 | skos:exactMatch |
| DrugBank targets (via HGNC references) | EntrezGene (via HGNC references) | Namespace Mapping | 1,932 | skos:exactMatch |
| PubMed MeSH terms | UMLS concepts (MeSH) | Value Dereference | 24,990 | skos:exactMatch |
| BioPax citations | PubMed | Reference Node | 719,011 | skos:relatedMatch |
| DrugBank targets | UniProt | Namespace Mapping | 4,533 | skos:exactMatch |
| UniProt organisms | UMLS concepts (NCBI Taxonomy) | Value Dereference | 354,717 | skos:exactMatch |
| UniProt citations | PubMed | Namespace Mapping | 780,839 | skos:exactMatch |