Linked Life Data

_1856693166647069509

Source:HTTP://PATHWAYCOMMONS.ORG/PSI2BP#_1856693166647069509

Statements in which the resource exists.
SubjectPredicateObjectContext
HTTP://PATHWAYCOMMONS.ORG/P...rdf:typebiopax3:Evidencelld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentApoptosis - Interactions involving proteins with a function related to apoptosis dataset MI:0875lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentCancer - Interactions investigated in the context of cancer dataset MI:0875lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentimex curation MI:0959lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentOnly protein-protein interactions full coverage MI:0957lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentimex curation curation depth MI:0955lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentProteomics (1615-9853) journal MI:0885lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commenta.brieger@em.uni-frankfurt.de contact-email MI:0634lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:comment2010 publication year MI:0886lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentThe column entitled "Protein length aa" most likely refers to the CDS (nucleotide) length, rather than the number of amino acids. caution MI:0618lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentCytoskeletal scaffolding proteins interact with Lynch-Syndrome associated mismatch repair protein MLH1.lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentBrieger A., Adryan B., Wolpert F., Passmann S., Zeuzem S., Trojan J. author-list MI:0636lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentHuman colon plasmid cDNA library (obtained from normal colon tissue of a 59-year-old female). library-used MI:0672lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentSeveral proteins identified by multiple transcripts. The entry for "protein":- FTHP1, (GenBank J04755), is stated to be a processed pseudogene, and no protein entry is available. According to the NCBI "Entry NM_001040070.1 was permanently suppressed because it is now thought that this gene is a pseudogene". Entry Z85636, does not contain a CDS. Entry AF471510 maps to Q0ZCG6 with only 82% identity, and has not been entered. Entry DQ840953, has only 92% identity with UniProt Q6PIK1 (amino acids 20-129) so has not been entered, Entry XM_001133484 has been removed from the NCBI website, but has 93% identity with P62249. Entry NC_001807.4 is obsolete and refers to a complete genome -i.e. several proteins. Entry DQ523681.1 also refers to a complete genome, so cannot be entered, similarly for entries DQ40444(4)7, DQ372886. Entry NM_001099081.1 refers to a Bovine protein, so has not been entered. Entry XM_001131713.1 has been removed from the NCBI site and cannot be uniquely identified on attempted remapping. data-processing MI:0633lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:xrefHTTP://PATHWAYCOMMONS.ORG/P...lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:xrefHTTP://PATHWAYCOMMONS.ORG/P...lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:xrefHTTP://PATHWAYCOMMONS.ORG/P...lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:experimentalFormHTTP://PATHWAYCOMMONS.ORG/P...lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:experimentalFormHTTP://PATHWAYCOMMONS.ORG/P...lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:evidenceHTTP://PATHWAYCOMMONS.ORG/P...lld:intact