| pubmed-article:19289445 | rdf:type | pubmed:Citation | lld:pubmed |
| pubmed-article:19289445 | lifeskim:mentions | umls-concept:C0205144 | lld:lifeskim |
| pubmed-article:19289445 | pubmed:issue | 9 | lld:pubmed |
| pubmed-article:19289445 | pubmed:dateCreated | 2009-4-24 | lld:pubmed |
| pubmed-article:19289445 | pubmed:abstractText | A new protocol for sequencing the messenger RNA in a cell, known as RNA-Seq, generates millions of short sequence fragments in a single run. These fragments, or 'reads', can be used to measure levels of gene expression and to identify novel splice variants of genes. However, current software for aligning RNA-Seq data to a genome relies on known splice junctions and cannot identify novel ones. TopHat is an efficient read-mapping algorithm designed to align reads from an RNA-Seq experiment to a reference genome without relying on known splice sites. | lld:pubmed |
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| pubmed-article:19289445 | pubmed:language | eng | lld:pubmed |
| pubmed-article:19289445 | pubmed:journal | http://linkedlifedata.com/r... | lld:pubmed |
| pubmed-article:19289445 | pubmed:citationSubset | IM | lld:pubmed |
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| pubmed-article:19289445 | pubmed:status | MEDLINE | lld:pubmed |
| pubmed-article:19289445 | pubmed:month | May | lld:pubmed |
| pubmed-article:19289445 | pubmed:issn | 1367-4811 | lld:pubmed |
| pubmed-article:19289445 | pubmed:author | pubmed-author:PachterLiorL | lld:pubmed |
| pubmed-article:19289445 | pubmed:author | pubmed-author:SalzbergSteve... | lld:pubmed |
| pubmed-article:19289445 | pubmed:author | pubmed-author:TrapnellColeC | lld:pubmed |
| pubmed-article:19289445 | pubmed:issnType | Electronic | lld:pubmed |
| pubmed-article:19289445 | pubmed:day | 1 | lld:pubmed |
| pubmed-article:19289445 | pubmed:volume | 25 | lld:pubmed |
| pubmed-article:19289445 | pubmed:owner | NLM | lld:pubmed |
| pubmed-article:19289445 | pubmed:authorsComplete | Y | lld:pubmed |
| pubmed-article:19289445 | pubmed:pagination | 1105-11 | lld:pubmed |
| pubmed-article:19289445 | pubmed:dateRevised | 2011-8-1 | lld:pubmed |
| pubmed-article:19289445 | pubmed:meshHeading | pubmed-meshheading:19289445... | lld:pubmed |
| pubmed-article:19289445 | pubmed:meshHeading | pubmed-meshheading:19289445... | lld:pubmed |
| pubmed-article:19289445 | pubmed:meshHeading | pubmed-meshheading:19289445... | lld:pubmed |
| pubmed-article:19289445 | pubmed:meshHeading | pubmed-meshheading:19289445... | lld:pubmed |
| pubmed-article:19289445 | pubmed:meshHeading | pubmed-meshheading:19289445... | lld:pubmed |
| pubmed-article:19289445 | pubmed:meshHeading | pubmed-meshheading:19289445... | lld:pubmed |
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| pubmed-article:19289445 | pubmed:meshHeading | pubmed-meshheading:19289445... | lld:pubmed |
| pubmed-article:19289445 | pubmed:year | 2009 | lld:pubmed |
| pubmed-article:19289445 | pubmed:articleTitle | TopHat: discovering splice junctions with RNA-Seq. | lld:pubmed |
| pubmed-article:19289445 | pubmed:affiliation | Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA. cole@cs.umd.edu | lld:pubmed |
| pubmed-article:19289445 | pubmed:publicationType | Journal Article | lld:pubmed |
| pubmed-article:19289445 | pubmed:publicationType | Research Support, U.S. Gov't, Non-P.H.S. | lld:pubmed |
| pubmed-article:19289445 | pubmed:publicationType | Research Support, N.I.H., Extramural | lld:pubmed |
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