| pubmed-article:17586777 | rdf:type | pubmed:Citation | lld:pubmed |
| pubmed-article:17586777 | lifeskim:mentions | umls-concept:C0035647 | lld:lifeskim |
| pubmed-article:17586777 | lifeskim:mentions | umls-concept:C0733755 | lld:lifeskim |
| pubmed-article:17586777 | lifeskim:mentions | umls-concept:C0542341 | lld:lifeskim |
| pubmed-article:17586777 | pubmed:issue | 7 | lld:pubmed |
| pubmed-article:17586777 | pubmed:dateCreated | 2007-6-25 | lld:pubmed |
| pubmed-article:17586777 | pubmed:abstractText | In this paper, we report a knowledge-based potential function, named the OPUS-Ca potential, that requires only Calpha positions as input. The contributions from other atomic positions were established from pseudo-positions artificially built from a Calpha trace for auxiliary purposes. The potential function is formed based on seven major representative molecular interactions in proteins: distance-dependent pairwise energy with orientational preference, hydrogen bonding energy, short-range energy, packing energy, tri-peptide packing energy, three-body energy, and solvation energy. From the testing of decoy recognition on a number of commonly used decoy sets, it is shown that the new potential function outperforms all known Calpha-based potentials and most other coarse-grained ones that require more information than Calpha positions. We hope that this potential function adds a new tool for protein structural modeling. | lld:pubmed |
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| pubmed-article:17586777 | pubmed:language | eng | lld:pubmed |
| pubmed-article:17586777 | pubmed:journal | http://linkedlifedata.com/r... | lld:pubmed |
| pubmed-article:17586777 | pubmed:citationSubset | IM | lld:pubmed |
| pubmed-article:17586777 | pubmed:chemical | http://linkedlifedata.com/r... | lld:pubmed |
| pubmed-article:17586777 | pubmed:status | MEDLINE | lld:pubmed |
| pubmed-article:17586777 | pubmed:month | Jul | lld:pubmed |
| pubmed-article:17586777 | pubmed:issn | 0961-8368 | lld:pubmed |
| pubmed-article:17586777 | pubmed:author | pubmed-author:MaJianpengJ | lld:pubmed |
| pubmed-article:17586777 | pubmed:author | pubmed-author:ChenMingzhiM | lld:pubmed |
| pubmed-article:17586777 | pubmed:author | pubmed-author:LiJialinJ | lld:pubmed |
| pubmed-article:17586777 | pubmed:author | pubmed-author:WuYinghaoY | lld:pubmed |
| pubmed-article:17586777 | pubmed:author | pubmed-author:LuMingyangM | lld:pubmed |
| pubmed-article:17586777 | pubmed:issnType | Print | lld:pubmed |
| pubmed-article:17586777 | pubmed:volume | 16 | lld:pubmed |
| pubmed-article:17586777 | pubmed:owner | NLM | lld:pubmed |
| pubmed-article:17586777 | pubmed:authorsComplete | Y | lld:pubmed |
| pubmed-article:17586777 | pubmed:pagination | 1449-63 | lld:pubmed |
| pubmed-article:17586777 | pubmed:dateRevised | 2010-9-16 | lld:pubmed |
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