| pubmed-article:16982004 | rdf:type | pubmed:Citation | lld:pubmed |
| pubmed-article:16982004 | lifeskim:mentions | umls-concept:C0025663 | lld:lifeskim |
| pubmed-article:16982004 | lifeskim:mentions | umls-concept:C0017337 | lld:lifeskim |
| pubmed-article:16982004 | lifeskim:mentions | umls-concept:C0017428 | lld:lifeskim |
| pubmed-article:16982004 | lifeskim:mentions | umls-concept:C0162326 | lld:lifeskim |
| pubmed-article:16982004 | lifeskim:mentions | umls-concept:C1707455 | lld:lifeskim |
| pubmed-article:16982004 | lifeskim:mentions | umls-concept:C0475264 | lld:lifeskim |
| pubmed-article:16982004 | pubmed:dateCreated | 2006-10-18 | lld:pubmed |
| pubmed-article:16982004 | pubmed:abstractText | Gene knockouts in a model organism such as mouse provide a valuable resource for the study of basic biology and human disease. Determining which gene has been inactivated by an untargeted gene trapping event poses a challenging annotation problem because gene trap sequence tags, which represent sequence near the vector insertion site of a trapped gene, are typically short and often contain unresolved residues. To understand better the localization of these sequences on the mouse genome, we compared stand-alone versions of the alignment programs BLAT, SSAHA, and MegaBLAST. A set of 3,369 sequence tags was aligned to build 34 of the mouse genome using default parameters for each algorithm. Known genome coordinates for the cognate set of full-length genes (1,659 sequences) were used to evaluate localization results. | lld:pubmed |
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| pubmed-article:16982004 | pubmed:language | eng | lld:pubmed |
| pubmed-article:16982004 | pubmed:journal | http://linkedlifedata.com/r... | lld:pubmed |
| pubmed-article:16982004 | pubmed:citationSubset | IM | lld:pubmed |
| pubmed-article:16982004 | pubmed:chemical | http://linkedlifedata.com/r... | lld:pubmed |
| pubmed-article:16982004 | pubmed:chemical | http://linkedlifedata.com/r... | lld:pubmed |
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| pubmed-article:16982004 | pubmed:chemical | http://linkedlifedata.com/r... | lld:pubmed |
| pubmed-article:16982004 | pubmed:status | MEDLINE | lld:pubmed |
| pubmed-article:16982004 | pubmed:issn | 1471-2164 | lld:pubmed |
| pubmed-article:16982004 | pubmed:author | pubmed-author:BabbittPatric... | lld:pubmed |
| pubmed-article:16982004 | pubmed:author | pubmed-author:HuangConrad... | lld:pubmed |
| pubmed-article:16982004 | pubmed:author | pubmed-author:KawamotoMichi... | lld:pubmed |
| pubmed-article:16982004 | pubmed:author | pubmed-author:FerrinThomas... | lld:pubmed |
| pubmed-article:16982004 | pubmed:author | pubmed-author:StrykeDougD | lld:pubmed |
| pubmed-article:16982004 | pubmed:author | pubmed-author:HarperCourtne... | lld:pubmed |
| pubmed-article:16982004 | pubmed:issnType | Electronic | lld:pubmed |
| pubmed-article:16982004 | pubmed:volume | 7 | lld:pubmed |
| pubmed-article:16982004 | pubmed:owner | NLM | lld:pubmed |
| pubmed-article:16982004 | pubmed:authorsComplete | Y | lld:pubmed |
| pubmed-article:16982004 | pubmed:pagination | 236 | lld:pubmed |
| pubmed-article:16982004 | pubmed:dateRevised | 2010-4-12 | lld:pubmed |
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| pubmed-article:16982004 | pubmed:meshHeading | pubmed-meshheading:16982004... | lld:pubmed |
| pubmed-article:16982004 | pubmed:year | 2006 | lld:pubmed |
| pubmed-article:16982004 | pubmed:articleTitle | Comparison of methods for genomic localization of gene trap sequences. | lld:pubmed |
| pubmed-article:16982004 | pubmed:affiliation | Department of Biopharmaceutical Sciences, University of California San Francisco, 1700 4th Street, San Francisco, CA 94143-2250, USA. charper@gmail.com | lld:pubmed |
| pubmed-article:16982004 | pubmed:publicationType | Journal Article | lld:pubmed |
| pubmed-article:16982004 | pubmed:publicationType | Comparative Study | lld:pubmed |
| pubmed-article:16982004 | pubmed:publicationType | Research Support, U.S. Gov't, Non-P.H.S. | lld:pubmed |
| pubmed-article:16982004 | pubmed:publicationType | Research Support, N.I.H., Extramural | lld:pubmed |
