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pubmed-article:15488234pubmed:dateCreated2004-10-18lld:pubmed
pubmed-article:15488234pubmed:abstractTextWe have developed an agar-embedding method for brain-slicing that minimizes the geometrical distortions which arise from handling and slicing the fixed postmortem brain. To facilitate postmortem brain-magnetic resonance imaging (MRI) co-registration, each hemisphere is processed separately. We embed the fixed brain hemisphere with reference markers in agar. The block containing the brain and markers is sliced at a fixed interval using a rotary slicer. Each slice is photographed with a high-resolution digital camera. The digital images are realigned as a 3-dimensional volume via a control point-based registration method for multi-slice registration. The realigned multiple slices of the reconstructed postmortem hemisphere are then co-registered to corresponding slices of an in vivo reference MRI-volume. We illustrate these postmortem MRI-brain co-registration methods to correlate in vivo T2-weighted MRI hyperintensities in gray and white matter with underlying pathology. For design-based stereology, the volume of interest (VOI) is defined using reproducible anatomical boundaries. This method is suitable for stereologic measures of structures ranging from defined nuclei to whole brain.lld:pubmed
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pubmed-article:15488234pubmed:statusMEDLINElld:pubmed
pubmed-article:15488234pubmed:monthOctlld:pubmed
pubmed-article:15488234pubmed:issn0165-0270lld:pubmed
pubmed-article:15488234pubmed:authorpubmed-author:SinghMMlld:pubmed
pubmed-article:15488234pubmed:authorpubmed-author:ChuiH CHClld:pubmed
pubmed-article:15488234pubmed:authorpubmed-author:ZarowCClld:pubmed
pubmed-article:15488234pubmed:authorpubmed-author:NESW RWRlld:pubmed
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pubmed-article:15488234pubmed:day30lld:pubmed
pubmed-article:15488234pubmed:volume139lld:pubmed
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pubmed-article:15488234pubmed:authorsCompleteYlld:pubmed
pubmed-article:15488234pubmed:pagination209-15lld:pubmed
pubmed-article:15488234pubmed:dateRevised2007-11-14lld:pubmed
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pubmed-article:15488234pubmed:year2004lld:pubmed
pubmed-article:15488234pubmed:articleTitleA standardized method for brain-cutting suitable for both stereology and MRI-brain co-registration.lld:pubmed
pubmed-article:15488234pubmed:affiliationDepartment of Neurology, Rancho Los Amigos National Rehabilitation Center, University of Southern California, Downey, CA 90242, USA. zarow@usc.edulld:pubmed
pubmed-article:15488234pubmed:publicationTypeJournal Articlelld:pubmed
pubmed-article:15488234pubmed:publicationTypeResearch Support, U.S. Gov't, P.H.S.lld:pubmed
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