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pubmed-article:15215404pubmed:issueWeb Server issuelld:pubmed
pubmed-article:15215404pubmed:dateCreated2004-6-24lld:pubmed
pubmed-article:15215404pubmed:abstractTextWe describe the Conserved Domain Search service (CD-Search), a web-based tool for the detection of structural and functional domains in protein sequences. CD-Search uses BLAST(R) heuristics to provide a fast, interactive service, and searches a comprehensive collection of domain models. Search results are displayed as domain architecture cartoons and pairwise alignments between the query and domain-model consensus sequences. Search results may be visualized in further detail by embedding the query sequence into multiple alignment displays and by mapping onto three-dimensional molecular graphic displays of known structures within the domain family. CD-Search can be accessed at http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi.lld:pubmed
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pubmed-article:15215404pubmed:dateRevised2009-11-18lld:pubmed
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pubmed-article:15215404pubmed:articleTitleCD-Search: protein domain annotations on the fly.lld:pubmed
pubmed-article:15215404pubmed:affiliationComputational Biology Branch, NCBI, National Library of Medicine, NIH, Building 38A, Room 5S508, 8600 Rockville Pike, Bethesda, MD 20894, USA. bauer@ncbi.nlm.nih.govlld:pubmed
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