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pubmed-article:8841145pubmed:abstractTextTryptophan was substituted for Tyr92 to create a sensitive and unique optical probe in order to study the unfolding and refolding kinetics of disulfide-intact bovine pancreatic ribonuclease A by fluorescence-detected stopped-flow techniques. The stability of the Trp mutant was found to be similar to that of wild-type RNase A when denatured by heat or GdnHCl, and the mutant was found to have 85% of the activity of the wild-type protein. Single-jump unfolding experiments showed that the unfolding pathway of the Trp mutant contains a fast and a slow phase similar to those seen previously for the wild-type protein, indicating that the mutation did not alter the unfolding pathway significantly. The activation energy of the slow-unfolding phase suggested that proline isomerization is involved, with the Trp residue presumably reporting on changes in its local environment. Single-jump refolding experiments revealed the presence of GdnHCl-independent burst phase and a native-like intermediate, most likely IN, on the folding pathway. Single-jump refolding data at various final GdnHCl concentrations were fit to a kinetic folding model involving two pathways to the native state; one pathway involves the intermediate IN, and the other is a direct one to the native state. This model provides site-specific information, since Trp92 monitors the formation of local structure only in the neighborhood of that residue. Double-jump refolding experiments permitted the detection of a previously reported, hydrophobically collapsed intermediate, I phi. The refolding data support the hypothesis that the region around position 92 is a chain-folding initiation site in the folding pathway.lld:pubmed
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pubmed-article:8841145pubmed:dateRevised2007-11-14lld:pubmed
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pubmed-article:8841145pubmed:articleTitleKinetic and thermodynamic studies of the folding/unfolding of a tryptophan-containing mutant of ribonuclease A.lld:pubmed
pubmed-article:8841145pubmed:affiliationBaker Laboratory of Chemistry, Cornell University, Ithaca, New York 14853-1301, USA.lld:pubmed
pubmed-article:8841145pubmed:publicationTypeJournal Articlelld:pubmed
pubmed-article:8841145pubmed:publicationTypeResearch Support, U.S. Gov't, P.H.S.lld:pubmed
pubmed-article:8841145pubmed:publicationTypeResearch Support, U.S. Gov't, Non-P.H.S.lld:pubmed
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