| pubmed-article:8627632 | rdf:type | pubmed:Citation | lld:pubmed |
| pubmed-article:8627632 | lifeskim:mentions | umls-concept:C0542341 | lld:lifeskim |
| pubmed-article:8627632 | lifeskim:mentions | umls-concept:C1442080 | lld:lifeskim |
| pubmed-article:8627632 | lifeskim:mentions | umls-concept:C0043309 | lld:lifeskim |
| pubmed-article:8627632 | lifeskim:mentions | umls-concept:C0332462 | lld:lifeskim |
| pubmed-article:8627632 | lifeskim:mentions | umls-concept:C0302891 | lld:lifeskim |
| pubmed-article:8627632 | pubmed:issue | 2 | lld:pubmed |
| pubmed-article:8627632 | pubmed:dateCreated | 1996-6-24 | lld:pubmed |
| pubmed-article:8627632 | pubmed:abstractText | This study generates ensembles of decoy or test structures for eight small proteins with a variety of different folds. Between 35,000 and 200,000 decoys were generated for each protein using our four-state off-lattice model together with a novel relaxation method. These give compact self-avoiding conformations each constrained to have native secondary structure. Ensembles of these decoy conformations were used to test the ability of several types of empirical contact, surface area and distance-dependent energy functions to distinguish between correct and incorrect conformations. These tests have shown that none of the functions is able to distinguish consistently either the X-ray conformation or the near-native conformations from others which are incorrect. Certain combinations of two of these energy functions were able, however, consistently to identify X-ray structures from amongst the decoy conformations. These same combinations are better also at identifying near-native conformations, consistently finding them with a hundred-fold higher frequency than chance. The fact that these combination energy functions perform better than generally accepted energy functions suggests their future use in folding simulations and perhaps threading predictions. | lld:pubmed |
| pubmed-article:8627632 | pubmed:grant | http://linkedlifedata.com/r... | lld:pubmed |
| pubmed-article:8627632 | pubmed:language | eng | lld:pubmed |
| pubmed-article:8627632 | pubmed:journal | http://linkedlifedata.com/r... | lld:pubmed |
| pubmed-article:8627632 | pubmed:citationSubset | IM | lld:pubmed |
| pubmed-article:8627632 | pubmed:chemical | http://linkedlifedata.com/r... | lld:pubmed |
| pubmed-article:8627632 | pubmed:status | MEDLINE | lld:pubmed |
| pubmed-article:8627632 | pubmed:month | May | lld:pubmed |
| pubmed-article:8627632 | pubmed:issn | 0022-2836 | lld:pubmed |
| pubmed-article:8627632 | pubmed:author | pubmed-author:LevittMM | lld:pubmed |
| pubmed-article:8627632 | pubmed:author | pubmed-author:ParcJJ | lld:pubmed |
| pubmed-article:8627632 | pubmed:issnType | Print | lld:pubmed |
| pubmed-article:8627632 | pubmed:day | 3 | lld:pubmed |
| pubmed-article:8627632 | pubmed:volume | 258 | lld:pubmed |
| pubmed-article:8627632 | pubmed:owner | NLM | lld:pubmed |
| pubmed-article:8627632 | pubmed:authorsComplete | Y | lld:pubmed |
| pubmed-article:8627632 | pubmed:pagination | 367-92 | lld:pubmed |
| pubmed-article:8627632 | pubmed:dateRevised | 2007-11-14 | lld:pubmed |
| pubmed-article:8627632 | pubmed:meshHeading | pubmed-meshheading:8627632-... | lld:pubmed |
| pubmed-article:8627632 | pubmed:meshHeading | pubmed-meshheading:8627632-... | lld:pubmed |
| pubmed-article:8627632 | pubmed:meshHeading | pubmed-meshheading:8627632-... | lld:pubmed |
| pubmed-article:8627632 | pubmed:meshHeading | pubmed-meshheading:8627632-... | lld:pubmed |
| pubmed-article:8627632 | pubmed:meshHeading | pubmed-meshheading:8627632-... | lld:pubmed |
| pubmed-article:8627632 | pubmed:year | 1996 | lld:pubmed |
| pubmed-article:8627632 | pubmed:articleTitle | Energy functions that discriminate X-ray and near native folds from well-constructed decoys. | lld:pubmed |
| pubmed-article:8627632 | pubmed:affiliation | Department of Structural Biology, Stanford School of Medicine, CA 94305, USA. | lld:pubmed |
| pubmed-article:8627632 | pubmed:publicationType | Journal Article | lld:pubmed |
| pubmed-article:8627632 | pubmed:publicationType | Research Support, U.S. Gov't, P.H.S. | lld:pubmed |
| pubmed-article:8627632 | pubmed:publicationType | Research Support, U.S. Gov't, Non-P.H.S. | lld:pubmed |
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