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pubmed-article:7833803pubmed:abstractTextThe fluorescence-monitored kinetics of folding and unfolding of barstar by guanidine hydrochloride (GdnHCl) in the folding transition zone, at pH 7, 25 degrees C, have been quantitatively analyzed using a 3-state mechanism: U(S)<-->UF<-->N. U(S) and UF are slow-refolding and fast-refolding unfolded forms of barstar, and N is the native protein. U(S) and UF probably differ in possessing trans and cis conformations, respectively, of the Tyr 47-Pro 48 bond. The 3-state model could be used because the kinetics of folding and unfolding of barstar show 2 phases, a fast phase and a slow phase, and because the relative amplitudes of the 2 phases depend only on the final refolding conditions and not on the initial conditions. Analysis of the observed kinetics according to the 3-state model yields the values of the 4 microscopic rate constants that describe the transitions between the 3 states at different concentrations of GdnHCl. The value of the equilibrium unfolded ratio U(S):UF (K21) and the values of the rate constants of the U(S)-->UF and UF-->U(S) reactions, k12 and k21, respectively, are shown to be independent of the concentration of GdnHCl. K21 has a value of 2.1 +/- 0.1, and k12 and k21 have values of 5.3 x 10(-3) s-1 and 11.2 x 10(-3) s-1, respectively. Double-jump experiments that monitor reactions that are silent to fluorescence monitoring were used to confirm the values of K21, k12, and k21 obtained from the 3-state analysis and thereby the validity of the 3-state model.(ABSTRACT TRUNCATED AT 250 WORDS)lld:pubmed
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pubmed-article:7833803pubmed:authorpubmed-author:UdgaonkarJ...lld:pubmed
pubmed-article:7833803pubmed:authorpubmed-author:ShastryM CMClld:pubmed
pubmed-article:7833803pubmed:authorpubmed-author:AgasheV RVRlld:pubmed
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pubmed-article:7833803pubmed:dateRevised2009-11-18lld:pubmed
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pubmed-article:7833803pubmed:articleTitleQuantitative analysis of the kinetics of denaturation and renaturation of barstar in the folding transition zone.lld:pubmed
pubmed-article:7833803pubmed:affiliationNational Centre For Biological Sciences, TIFR Centre, Indian Institute of Science Campus, Bangalore.lld:pubmed
pubmed-article:7833803pubmed:publicationTypeJournal Articlelld:pubmed
pubmed-article:7833803pubmed:publicationTypeResearch Support, Non-U.S. Gov'tlld:pubmed
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