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pubmed-article:7703374pubmed:abstractTextWe used a Monte Carlo approach to compute the statistical properties of closed DNA chains with different descriptions of the electrostatic interactions. We compared these computed results with experimentally measured knotting probabilities, which are very sensitive to intersegment interactions. The calculated results based on the Debye-Hückel approximation of the solution of the Poisson-Boltzmann equation agreed very well with the published experimental data, while potential based on counterion condensation theory was clearly less satisfactory. We then compared the simpler hard-core approximation of electrostatic interactions to the Debye-Hückel potential. The hard-core approximation, specified in terms of a DNA effective diameter, gives the same conformational properties of random coils as the Debye-Hückel approximation. We found clear but relatively small differences between the two potentials for the conformational properties of supercoiled DNA.lld:pubmed
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pubmed-article:7703374pubmed:year1995lld:pubmed
pubmed-article:7703374pubmed:articleTitleModeling of long-range electrostatic interactions in DNA.lld:pubmed
pubmed-article:7703374pubmed:affiliationDepartment of Molecular and Cell Biology, University of California, Berkeley 94720.lld:pubmed
pubmed-article:7703374pubmed:publicationTypeJournal Articlelld:pubmed
pubmed-article:7703374pubmed:publicationTypeComparative Studylld:pubmed
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