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pubmed-article:20598134pubmed:abstractTextProtein-DNA interaction constitutes a basic mechanism for the genetic regulation of target gene expression. Deciphering this mechanism has been a daunting task due to the difficulty in characterizing protein-bound DNA on a large scale. A powerful technique has recently emerged that couples chromatin immunoprecipitation (ChIP) with next-generation sequencing, (ChIP-Seq). This technique provides a direct survey of the cistrom of transcription factors and other chromatin-associated proteins. In order to realize the full potential of this technique, increasingly sophisticated statistical algorithms have been developed to analyze the massive amount of data generated by this method.lld:pubmed
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pubmed-article:20598134pubmed:authorpubmed-author:ChinnaiyanAru...lld:pubmed
pubmed-article:20598134pubmed:authorpubmed-author:QinZhaohui...lld:pubmed
pubmed-article:20598134pubmed:authorpubmed-author:YuJindanJlld:pubmed
pubmed-article:20598134pubmed:authorpubmed-author:HuMingMlld:pubmed
pubmed-article:20598134pubmed:authorpubmed-author:YuJianjunJlld:pubmed
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pubmed-article:20598134pubmed:authorpubmed-author:MaherChristop...lld:pubmed
pubmed-article:20598134pubmed:authorpubmed-author:ShenJinchengJlld:pubmed
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pubmed-article:20598134pubmed:dateRevised2011-8-1lld:pubmed
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pubmed-article:20598134pubmed:articleTitleHPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data.lld:pubmed
pubmed-article:20598134pubmed:affiliationCenter for Statistical Genetics, Department of Biostatistics, University of Michigan, Ann Arbor, 48109-2029, USA. qin@umich.edulld:pubmed
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