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pubmed-article:20230626pubmed:abstractTextThe most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a reference genome sequence for the same species. These mappings can then be used to identify genetic differences among individuals in a population, and perhaps ultimately to explain phenotypic variation. Many algorithms capable of aligning short reads to the reference, and determining differences between them have been reported. Much less has been reported on how to use these technologies to determine genetic differences among individuals of a species for which a reference sequence is not available, which drastically limits the number of species that can easily benefit from these new technologies.lld:pubmed
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pubmed-article:20230626pubmed:authorpubmed-author:ZhangYuYlld:pubmed
pubmed-article:20230626pubmed:authorpubmed-author:MillerWebbWlld:pubmed
pubmed-article:20230626pubmed:authorpubmed-author:SchusterSteph...lld:pubmed
pubmed-article:20230626pubmed:authorpubmed-author:HayesVanessa...lld:pubmed
pubmed-article:20230626pubmed:authorpubmed-author:RatanAakroshAlld:pubmed
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pubmed-article:20230626pubmed:volume11lld:pubmed
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pubmed-article:20230626pubmed:pagination130lld:pubmed
pubmed-article:20230626pubmed:dateRevised2010-9-30lld:pubmed
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pubmed-article:20230626pubmed:year2010lld:pubmed
pubmed-article:20230626pubmed:articleTitleCalling SNPs without a reference sequence.lld:pubmed
pubmed-article:20230626pubmed:affiliationCenter for Comparative Genomics and Bioinformatics, Pennsylvania State University, USA. ratan@bx.psu.edu.lld:pubmed
pubmed-article:20230626pubmed:publicationTypeJournal Articlelld:pubmed
pubmed-article:20230626pubmed:publicationTypeResearch Support, U.S. Gov't, Non-P.H.S.lld:pubmed
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