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pubmed-article:20156354pubmed:abstractTextcERMIT is a computationally efficient motif discovery tool based on analyzing genome-wide quantitative regulatory evidence. Instead of pre-selecting promising candidate sequences, it utilizes information across all sequence regions to search for high-scoring motifs. We apply cERMIT on a range of direct binding and overexpression datasets; it substantially outperforms state-of-the-art approaches on curated ChIP-chip datasets, and easily scales to current mammalian ChIP-seq experiments with data on thousands of non-coding regions.lld:pubmed
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pubmed-article:20156354pubmed:authorpubmed-author:MukherjeeSaya...lld:pubmed
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pubmed-article:20156354pubmed:authorpubmed-author:DingXuanXlld:pubmed
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pubmed-article:20156354pubmed:authorpubmed-author:JayasuryaKart...lld:pubmed
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pubmed-article:20156354pubmed:articleTitleEvidence-ranked motif identification.lld:pubmed
pubmed-article:20156354pubmed:affiliationProgram for Computational Biology and Bioinformatics, Duke University, 102 North Building, Durham, NC 27708, USA.lld:pubmed
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pubmed-article:20156354pubmed:publicationTypeResearch Support, U.S. Gov't, Non-P.H.S.lld:pubmed
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