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pubmed-article:1630904pubmed:abstractTextWe have investigated the conformations of the hexadeoxyribonucleotide, L-d(CGCGCG) composed of L-deoxyribose, the mirror image molecule of natural D-deoxyribose. In this paper, we report the synthesis of four L-deoxynucleosides and the L-oligonucleotide-ethidium bromide interactions. The L-deoxyribose synthon 9 was synthesized from L-arabinose with an over all yield of 28.5% via the Barton-McCombie reaction. The L-deoxynucleosides were obtained by a glycosylation of appropriate nucleobase derivatives with the 1-chloro sugar 9. After derivatization to nucleoside phosphoramidites, L-deoxycytidine and L-deoxyguanosine were incorporated into a hexadeoxynucleotide, L-d(CGCGCG) by a solid-phase beta-cyanoethylphosphoramidite method. This L-hexanucleotide was resistant to digestion with nuclease P1. The conformations of L-d(CGCGCG) were an exact mirror image of that of the corresponding natural one as described previously, and the conformations of the L-d(CGCGCG)-ethidium bromide complex were also the mirror images of those of the D-d(CGCGCG)-ethidium bromide complex under both low and high salt conditions. These results suggest that ethidium bromide prefers not a right-handed helical sense, but the base-base stacking geometry of the B-form rather than that of the Z-form. Thus, L-DNA would be a useful tool for studying DNA-drug interactions.lld:pubmed
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pubmed-article:1630904pubmed:pagination3325-32lld:pubmed
pubmed-article:1630904pubmed:dateRevised2009-11-18lld:pubmed
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pubmed-article:1630904pubmed:articleTitleSynthesis and properties of mirror-image DNA.lld:pubmed
pubmed-article:1630904pubmed:affiliationOsaka University of Pharmaceutical Sciences, Japan.lld:pubmed
pubmed-article:1630904pubmed:publicationTypeJournal Articlelld:pubmed
pubmed-article:1630904pubmed:publicationTypeResearch Support, Non-U.S. Gov'tlld:pubmed
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