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pubmed-article:15315758pubmed:abstractTextThe transcription factor NF-kappaB regulates a wide variety of genes involved in multiple processes. Although the apparent consensus sequence of DNA binding sites for NF-kappaB (kappaB sites) is very broad, the sites active in any one gene show remarkable evolutionary stability. Using a lentivirus-based methodology for implantation of gene regulatory sequences we show that for genes with two kappaB sites, both are required for activity. Swapping sites between kappaB-dependent genes altered NF-kappaB dimer specificity of the promoters and revealed that two kappaB sites can function together as a module to regulate gene activation. Further, although the sequence of the kappaB site is important for determining kappaB family member specificity, rather than determining the ability of a particular dimer to bind effectively, the sequence affects which coactivators will form productive interactions with the bound NF-kappaB dimer. This suggests that binding sites may impart a specific configuration to bound transcription factors.lld:pubmed
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pubmed-article:15315758pubmed:articleTitleOne nucleotide in a kappaB site can determine cofactor specificity for NF-kappaB dimers.lld:pubmed
pubmed-article:15315758pubmed:affiliationDivision of Biology, California Institute of Technology, Pasadena, CA 91125, USA.lld:pubmed
pubmed-article:15315758pubmed:publicationTypeJournal Articlelld:pubmed
pubmed-article:15315758pubmed:publicationTypeResearch Support, U.S. Gov't, P.H.S.lld:pubmed
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