PathwayStep

Definition: A step in an ordered pathway. Rationale: Some pathways can have a temporal order. For example, if the pathway boundaries are based on a perturbation phenotype link, the pathway might start with the perturbing agent and end at gene expression leading to the observed changes. Pathway steps can represent directed compound graphs. Usage: Multiple interactions may occur in a pathway step, each should be listed in the stepProcess property. Order relationships between pathway steps may be established with the nextStep slot. If the reaction contained in the step is a reversible biochemical reaction but physiologically has a direction in the context of this pathway, use the subclass BiochemicalPathwayStep. Example: A metabolic pathway may contain a pathway step composed of one biochemical reaction (BR1) and one catalysis (CAT1) instance, where CAT1 describes the catalysis of BR1. The M phase of the cell cycle, defined as a pathway, precedes the G1 phase, also defined as a pathway.

Source:http://www.biopax.org/release/biopax-level3.owl#PathwayStep

Statements in which the resource exists.
SubjectPredicateObjectContext
biopax3:PathwaySteprdf:typeowl:Classlld:biopax3
biopax3:PathwaySteprdf:typeowl:Classlld:intact
biopax3:PathwaySteprdf:typeowl:Classlld:mint
biopax3:PathwaySteprdfs:commentDefinition: A step in an ordered pathway. Rationale: Some pathways can have a temporal order. For example, if the pathway boundaries are based on a perturbation phenotype link, the pathway might start with the perturbing agent and end at gene expression leading to the observed changes. Pathway steps can represent directed compound graphs. Usage: Multiple interactions may occur in a pathway step, each should be listed in the stepProcess property. Order relationships between pathway steps may be established with the nextStep slot. If the reaction contained in the step is a reversible biochemical reaction but physiologically has a direction in the context of this pathway, use the subclass BiochemicalPathwayStep. Example: A metabolic pathway may contain a pathway step composed of one biochemical reaction (BR1) and one catalysis (CAT1) instance, where CAT1 describes the catalysis of BR1. The M phase of the cell cycle, defined as a pathway, precedes the G1 phase, also defined as a pathway.lld:biopax3
biopax3:PathwaySteprdfs:commentDefinition: A step in an ordered pathway. Rationale: Some pathways can have a temporal order. For example, if the pathway boundaries are based on a perturbation phenotype link, the pathway might start with the perturbing agent and end at gene expression leading to the observed changes. Pathway steps can represent directed compound graphs. Usage: Multiple interactions may occur in a pathway step, each should be listed in the stepProcess property. Order relationships between pathway steps may be established with the nextStep slot. If the reaction contained in the step is a reversible biochemical reaction but physiologically has a direction in the context of this pathway, use the subclass BiochemicalPathwayStep. Example: A metabolic pathway may contain a pathway step composed of one biochemical reaction (BR1) and one catalysis (CAT1) instance, where CAT1 describes the catalysis of BR1. The M phase of the cell cycle, defined as a pathway, precedes the G1 phase, also defined as a pathway.lld:intact
biopax3:PathwaySteprdfs:commentDefinition: A step in an ordered pathway. Rationale: Some pathways can have a temporal order. For example, if the pathway boundaries are based on a perturbation phenotype link, the pathway might start with the perturbing agent and end at gene expression leading to the observed changes. Pathway steps can represent directed compound graphs. Usage: Multiple interactions may occur in a pathway step, each should be listed in the stepProcess property. Order relationships between pathway steps may be established with the nextStep slot. If the reaction contained in the step is a reversible biochemical reaction but physiologically has a direction in the context of this pathway, use the subclass BiochemicalPathwayStep. Example: A metabolic pathway may contain a pathway step composed of one biochemical reaction (BR1) and one catalysis (CAT1) instance, where CAT1 describes the catalysis of BR1. The M phase of the cell cycle, defined as a pathway, precedes the G1 phase, also defined as a pathway.lld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:SequenceLocationlld:biopax3
biopax3:PathwayStepowl:disjointWithbiopax3:SequenceLocationlld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:SequenceLocationlld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:EntityFeaturelld:biopax3
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biopax3:PathwayStepowl:disjointWithbiopax3:EntityFeaturelld:mint
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biopax3:PathwayStepowl:disjointWithbiopax3:BioSourcelld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:BioSourcelld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:ChemicalStructurelld:biopax3
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biopax3:PathwayStepowl:disjointWithbiopax3:ChemicalStructurelld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:ControlledVocabular...lld:biopax3
biopax3:PathwayStepowl:disjointWithbiopax3:ControlledVocabular...lld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:ControlledVocabular...lld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:DeltaGlld:biopax3
biopax3:PathwayStepowl:disjointWithbiopax3:DeltaGlld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:DeltaGlld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:EntityReferencelld:biopax3
biopax3:PathwayStepowl:disjointWithbiopax3:EntityReferencelld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:EntityReferencelld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:Evidencelld:biopax3
biopax3:PathwayStepowl:disjointWithbiopax3:Evidencelld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:Evidencelld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:ExperimentalFormlld:biopax3
biopax3:PathwayStepowl:disjointWithbiopax3:ExperimentalFormlld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:ExperimentalFormlld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:KPrimelld:biopax3
biopax3:PathwayStepowl:disjointWithbiopax3:KPrimelld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:KPrimelld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:Provenancelld:biopax3
biopax3:PathwayStepowl:disjointWithbiopax3:Provenancelld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:Provenancelld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:Scorelld:biopax3
biopax3:PathwayStepowl:disjointWithbiopax3:Scorelld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:Scorelld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:Stoichiometrylld:biopax3
biopax3:PathwayStepowl:disjointWithbiopax3:Stoichiometrylld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:Stoichiometrylld:mint
biopax3:PathwayStepowl:disjointWithbiopax3:Xreflld:biopax3
biopax3:PathwayStepowl:disjointWithbiopax3:Xreflld:intact
biopax3:PathwayStepowl:disjointWithbiopax3:Xreflld:mint
biopax3:PathwaySteprdfs:subClassOfbiopax3:UtilityClasslld:biopax3
biopax3:PathwaySteprdfs:subClassOfbiopax3:UtilityClasslld:intact
biopax3:PathwaySteprdfs:subClassOfbiopax3:UtilityClasslld:mint
http://www.reactome.org/bio...rdf:typebiopax3:PathwaySteplld:biopax3
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http://www.reactome.org/bio...rdf:typebiopax3:PathwaySteplld:biopax3
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