Linked Life Data

_1312751288758863440

Source:HTTP://PATHWAYCOMMONS.ORG/PSI2BP#_1312751288758863440

Statements in which the resource exists.
SubjectPredicateObjectContext
HTTP://PATHWAYCOMMONS.ORG/P...rdf:typebiopax3:Evidencelld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentSynapse - Interactions of proteins with an established role in the presynapse. dataset MI:0875lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentApoptosis - Interactions involving proteins with a function related to apoptosis dataset MI:0875lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentimex curation MI:0959lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentOnly protein-protein interactions full coverage MI:0957lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentimex curation curation depth MI:0955lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentProteomics (1615-9853) journal MI:0885lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:comment1 last-imex-assignedlld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:comment2007 publication year MI:0886lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentProtein mapping from IPI identifiers to UniProt KB accession numbers was carried out using the PICR tool (http://www.ebi.ac.uk/Tools/picr).Mappings are done on the basis of 100% sequence identity over the whole sequence. The following IPI numbers were not valid IPI00199003, IPI00009865 and IPI00372477. The following proteins could not be mapped to UniProt accession numbers and are identified by IntAct identifiers (bracketed identifier) ; IPI00373233 (EBI-1571381), IPI00365192 (EBI-1571384), IPI00365130 (EBI-1571388), IPI00372079 (EBI-1571392), IPI00368391 (EBI-1572037), IPI00767320 (EBI-1572050), IPI00367347 (EBI-1572054), IPI00361486 (EBI-1572056), IPI00368082 (EBI-1572059), IPI00370353 (EBI-1572062), IPI00766216 (EBI-1572065), IPI00767314 (EBI-1572068), IPI00360086 (EBI-1572071), IPI00767813 (EBI-1572071), IPI00768298 (EBI-1572074), IPI00768616 (EBI-1572077), IPI00391468 (EBI-1572080), IPI00768003 (EBI-1572083), IPI00767360 (EBI-1572086), IPI00767825 (EBI-1572089), IPI00764166 (EBI-1572092), IPI00188079 (EBI-1572095), IPI00368692 (EBI-1572098), IPI00763922 (EBI-1572101) and IPI00203773 (EBI-1572104). data-processing MI:0633lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentThe authors used the following critrea to select identified proteins. The proteins had to be identified in at least two out of four separate MS/MS runs; the protein had to be identified using at least five peptides; at least one of the peptides used to identify the protein had to have a peptide score of >=0.5 (Mascot search engine score). comment MI:0612lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentChemical crosslinking reagent dithiobis (succinimidyl propionate) (DSP) was administered to rat vascular endothelial cells (1 mM for 30 min) following a 30 min incubation with preferentially biotinylated rat recombinant TNF-alpha. Following crosslinking and cell lysis, the biotinylated signaling complex was recovered using immobilized streptavidin. The tryptic digest mixture was analyzed via LC MS/MS. exp-modification MI:0627lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentIsolation of signal transduction complexes using biotin and crosslinking methodologies.lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:commentFreed JK., Smith JR., Li P., Greene AS. author-list MI:0636lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:xrefHTTP://PATHWAYCOMMONS.ORG/P...lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:xrefHTTP://PATHWAYCOMMONS.ORG/P...lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:xrefHTTP://PATHWAYCOMMONS.ORG/P...lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:experimentalFormHTTP://PATHWAYCOMMONS.ORG/P...lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:experimentalFormHTTP://PATHWAYCOMMONS.ORG/P...lld:intact
HTTP://PATHWAYCOMMONS.ORG/P...biopax3:evidenceHTTP://PATHWAYCOMMONS.ORG/P...lld:intact