Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
6
pubmed:dateCreated
2007-5-30
pubmed:abstractText
Cataloguing gene expression during development of the genitourinary tract will increase our understanding not only of this process but also of congenital defects and disease affecting this organ system. We have developed a high-resolution ontology with which to describe the subcompartments of the developing murine genitourinary tract. This ontology incorporates what can be defined histologically and begins to encompass other structures and cell types already identified at the molecular level. The ontology is being used to annotate in situ hybridisation data generated as part of the Genitourinary Development Molecular Anatomy Project (GUDMAP), a publicly available data resource on gene and protein expression during genitourinary development. The GUDMAP ontology encompasses Theiler stage (TS) 17-27 of development as well as the sexually mature adult. It has been written as a partonomic, text-based, hierarchical ontology that, for the embryological stages, has been developed as a high-resolution expansion of the existing Edinburgh Mouse Atlas Project (EMAP) ontology. It also includes group terms for well-characterised structural and/or functional units comprising several sub-structures, such as the nephron and juxtaglomerular complex. Each term has been assigned a unique identification number. Synonyms have been used to improve the success of query searching and maintain wherever possible existing EMAP terms relating to this organ system. We describe here the principles and structure of the ontology and provide representative diagrammatic, histological, and whole mount and section RNA in situ hybridisation images to clarify the terms used within the ontology. Visual examples of how terms appear in different specimen types are also provided.
pubmed:grant
http://linkedlifedata.com/resource/pubmed/grant/DK070136-02, http://linkedlifedata.com/resource/pubmed/grant/DK070181, http://linkedlifedata.com/resource/pubmed/grant/DK07020001, http://linkedlifedata.com/resource/pubmed/grant/R01 DK061459-01A1, http://linkedlifedata.com/resource/pubmed/grant/R01 DK061459-01A1S1, http://linkedlifedata.com/resource/pubmed/grant/R01 DK061459-02, http://linkedlifedata.com/resource/pubmed/grant/R01 DK061459-03, http://linkedlifedata.com/resource/pubmed/grant/R01 DK061459-04, http://linkedlifedata.com/resource/pubmed/grant/R01 DK061459-05, http://linkedlifedata.com/resource/pubmed/grant/R01 DK061459-06, http://linkedlifedata.com/resource/pubmed/grant/R01 DK061459-07, http://linkedlifedata.com/resource/pubmed/grant/R01 DK061459-07S1, http://linkedlifedata.com/resource/pubmed/grant/R01 DK061459-08, http://linkedlifedata.com/resource/pubmed/grant/R01 DK061459-09, http://linkedlifedata.com/resource/pubmed/grant/R56 DK082963-01, http://linkedlifedata.com/resource/pubmed/grant/U01 DK070136-02, http://linkedlifedata.com/resource/pubmed/grant/U01 DK070181-03, http://linkedlifedata.com/resource/pubmed/grant/U01 DK070200-01
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-10473126, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-10804187, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-11084657, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-1127791, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-11376487, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-11684660, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-12074550, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-12352376, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-12385932, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-12925600, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-14532762, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-14550793, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-14602679, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-14641326, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-14734318, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-15043218, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-15086026, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-15173882, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-15236325, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-15566564, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-15567713, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-15821257, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-16002989, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-16049069, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-16186816, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-16459152, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-16538671, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-16598715, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-1699718, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-17146778, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-2247150, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-2573523, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-682603, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-7431485, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-9118800, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-9382843, http://linkedlifedata.com/resource/pubmed/commentcorrection/17452023-9742072
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:status
MEDLINE
pubmed:month
Jun
pubmed:issn
1872-7298
pubmed:author
pubmed-author:BaldockRichard ARA, pubmed-author:BertramJohn FJF, pubmed-author:BeverdamAnnemiekA, pubmed-author:BrennanJaneJ, pubmed-author:CapelBlancheB, pubmed-author:ChiuHan ShengHS, pubmed-author:ClementsDaveD, pubmed-author:Cullen-McEwenLuiseL, pubmed-author:DavidsonDuncan RDR, pubmed-author:DaviesJamie AJA, pubmed-author:FlemingJeanJ, pubmed-author:GeorgasKylieK, pubmed-author:GilbertThierryT, pubmed-author:HaarD JDJ, pubmed-author:HerzlingerDorisD, pubmed-author:HoughtonDerekD, pubmed-author:KaufmanMatt HMH, pubmed-author:KleymenovaElenaE, pubmed-author:KoopmanPeter APA, pubmed-author:LewisAlfor GAG, pubmed-author:LittleMelissa HMH, pubmed-author:McMahonAndrew PAP, pubmed-author:MendelsohnCathy LCL, pubmed-author:MitchellEleanor KEK, pubmed-author:RumballeBree ABA, pubmed-author:SweeneyDerina EDE, pubmed-author:ValeriusM ToddMT, pubmed-author:YamadaGenG, pubmed-author:YangYiyaY
pubmed:issnType
Electronic
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