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pubmed-article:16530704pubmed:abstractTextWe studied the relationships between genetic and epigenetic alterations in gastrointestinal cancer by integrating DNA copy number changes determined by arbitrarily primed PCR (AP-PCR) with DNA methylation variations estimated by methylation-sensitive amplified fragment length polymorphism (MS-AFLP). We analyzed about 100 different chromosomal regions by AP-PCR and over 150 random CpG loci by MS-AFLP in human colon and gastric carcinomas. DNA hypomethylation and hypermethylation alterations distributed gradually and increased with cancer patient age, in contrast with the age-independent genomic alterations. Increased DNA hypomethylation and hypermethylation correlated with increased genomic damage, but only hypomethylation was highly significant in multivariate analyses. We conclude that age-dependent accumulation of DNA demethylation precedes diploidy loss in a significant subset of gastrointestinal cancers.lld:pubmed
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pubmed-article:16530704pubmed:articleTitleGlobal DNA demethylation in gastrointestinal cancer is age dependent and precedes genomic damage.lld:pubmed
pubmed-article:16530704pubmed:affiliationBurnham Institute for Medical Research, Cancer Genetics and Epigenetics Research Program, 10901 North Torrey Pines Road, La Jolla, California 92037, USA.lld:pubmed
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