Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
Pt 10
pubmed:dateCreated
2006-3-2
pubmed:abstractText
Agmatine, which results from the decarboxylation of L-arginine by arginine decarboxylase, is a metabolic intermediate in the biosynthesis of putresine and higher polyamines (spermidine and spermine). Recent studies indicate that agmatine can have several important biochemical effects in humans, ranging from effects on the central nervous system to cell proliferation in cancer and viral replication. Agmatinase catalyses the hydrolysis of agmatine to putresine and urea and is a major target for drug action and development. The human agmatinase gene encodes a 352-residue protein with a putative mitochondrial targeting sequence at the N-terminus. Human agmatinase (residues Ala36-Val352) has been overexpressed as a fusion with both N- and C-terminal purification tags in Escherichia coli and crystallized in the presence of Mn2+ and 1,6-diaminohexane at 297 K using polyethylene glycol 4000 as a precipitant. X-ray diffraction data were collected at 100 K to 2.49 A from a flash-frozen crystal. The crystals are tetragonal, belonging to space group P4(2), with unit-cell parameters a = b = 114.54, c = 125.65 A, alpha = beta = gamma = 90 degrees. Three monomers are likely to be present in the asymmetric unit, giving a crystal volume per protein weight (VM) of 3.66 A3 Da(-1) and a solvent content of 66.4%.
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-10353725, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-10785653, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-10931887, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-11804860, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-11914032, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-12020346, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-12859189, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-14648699, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-15355972, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-15388942, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-5432063, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-5700707, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-7906055, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-8064866, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-8849731, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-8858963, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-9507056, http://linkedlifedata.com/resource/pubmed/commentcorrection/16511187-9851555
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
http://linkedlifedata.com/resource/pubmed/chemical/1,6-diaminohexane, http://linkedlifedata.com/resource/pubmed/chemical/Agmatine, http://linkedlifedata.com/resource/pubmed/chemical/Arginine, http://linkedlifedata.com/resource/pubmed/chemical/Carboxy-Lyases, http://linkedlifedata.com/resource/pubmed/chemical/DNA, Complementary, http://linkedlifedata.com/resource/pubmed/chemical/Diamines, http://linkedlifedata.com/resource/pubmed/chemical/Magnesium, http://linkedlifedata.com/resource/pubmed/chemical/Polyethylene Glycols, http://linkedlifedata.com/resource/pubmed/chemical/Recombinant Fusion Proteins, http://linkedlifedata.com/resource/pubmed/chemical/Spermidine, http://linkedlifedata.com/resource/pubmed/chemical/Spermine, http://linkedlifedata.com/resource/pubmed/chemical/Urea, http://linkedlifedata.com/resource/pubmed/chemical/Ureohydrolases, http://linkedlifedata.com/resource/pubmed/chemical/agmatinase, http://linkedlifedata.com/resource/pubmed/chemical/arginine decarboxylase
pubmed:status
MEDLINE
pubmed:month
Oct
pubmed:issn
1744-3091
pubmed:author
pubmed:issnType
Electronic
pubmed:day
1
pubmed:volume
61
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
889-91
pubmed:dateRevised
2009-11-18
pubmed:meshHeading
pubmed-meshheading:16511187-Agmatine, pubmed-meshheading:16511187-Arginine, pubmed-meshheading:16511187-Carboxy-Lyases, pubmed-meshheading:16511187-Catalysis, pubmed-meshheading:16511187-Crystallography, X-Ray, pubmed-meshheading:16511187-DNA, Complementary, pubmed-meshheading:16511187-Diamines, pubmed-meshheading:16511187-Escherichia coli, pubmed-meshheading:16511187-Humans, pubmed-meshheading:16511187-Hydrolysis, pubmed-meshheading:16511187-Kidney, pubmed-meshheading:16511187-Magnesium, pubmed-meshheading:16511187-Mitochondria, pubmed-meshheading:16511187-Polyethylene Glycols, pubmed-meshheading:16511187-Protein Conformation, pubmed-meshheading:16511187-Protein Structure, Tertiary, pubmed-meshheading:16511187-Recombinant Fusion Proteins, pubmed-meshheading:16511187-Spermidine, pubmed-meshheading:16511187-Spermine, pubmed-meshheading:16511187-Temperature, pubmed-meshheading:16511187-Urea, pubmed-meshheading:16511187-Ureohydrolases, pubmed-meshheading:16511187-X-Ray Diffraction
pubmed:year
2005
pubmed:articleTitle
Expression, crystallization and preliminary X-ray crystallographic analysis of human agmatinase.
pubmed:affiliation
Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul 151-742, South Korea.
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't