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pubmed-article:15912553pubmed:abstractTextThe ability of cationic phosphoramidate pyrimidine alpha-oligonucleotides (ONs) to form triplexes with DNA duplexes was investigated by UV melting experiments, circular dichroism spectroscopy and gel mobility shift experiments. Replacement of the phosphodiester linkages in alpha-ONs with positively charged phosphoramidate linkages results in more efficient triplex formation, the triplex stability increasing with the number of positive charges. At a neutral pH and in the absence of magnesium ions, it was found that a fully cationic phosphoramidate alpha-TFO (triplex-forming oligonucleotide) forms a highly stable triplex that melts at a higher temperature than the duplex target. No hysteresis between the annealing and melting curves was noticed; this indicates fast association. Moreover, the recognition of a DNA duplex with a cationic alpha-TFO through Hoogsteen base pairing is highly sequence-specific. To the best of our knowledge, this is the first report of stable triplexes in the pyrimidine motif formed by cationic alpha-oligonucleotides and duplex targets.lld:pubmed
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pubmed-article:15912553pubmed:authorpubmed-author:HeitzFrédéric...lld:pubmed
pubmed-article:15912553pubmed:authorpubmed-author:VasseurJean-J...lld:pubmed
pubmed-article:15912553pubmed:authorpubmed-author:DebartFrançoi...lld:pubmed
pubmed-article:15912553pubmed:authorpubmed-author:MichelThibaut...lld:pubmed
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pubmed-article:15912553pubmed:pagination1254-62lld:pubmed
pubmed-article:15912553pubmed:dateRevised2006-11-15lld:pubmed
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pubmed-article:15912553pubmed:articleTitleHighly stable DNA triplexes formed with cationic phosphoramidate pyrimidine alpha-oligonucleotides.lld:pubmed
pubmed-article:15912553pubmed:affiliationLCOBS, UMR 5625 CNRS-UMII, CC 008, Université Montpellier II, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France.lld:pubmed
pubmed-article:15912553pubmed:publicationTypeJournal Articlelld:pubmed
pubmed-article:15912553pubmed:publicationTypeResearch Support, Non-U.S. Gov'tlld:pubmed
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