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PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
Pt 3
pubmed:dateCreated
2005-5-9
pubmed:databankReference
pubmed:abstractText
Two thermophilic, spore-forming strains, TM1(T) and TM5, were isolated from deep-sea sediment (4000 m below sea level) of the Ayu Trough in the western Pacific Ocean. Cells of the two strains were Gram-positive, motile and rod-shaped. Their spores were ellipsoidal, subterminal to terminal and occurred in swollen sporangia. The two strains grew at temperatures up to 65 degrees C and in the pH range 6.5-9.0. The NaCl concentration for optimal growth was 3.0 % (w/v) and growth was inhibited by 5 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strains TM1(T) and TM5 belonged to the genus Bacillus, and that strain TM1(T) was most closely related to Bacillus aeolius DSM 15084(T) (96.7 %), Bacillus smithii DSM 4216(T) (96.1 %), Bacillus methanolicus NCIMB 13113(T) (95.8 %) and Bacillus pallidus DSM 3670(T) (95.7 %). Between the 16S rRNA gene sequences of strains TM1(T) and TM5 there were only three nucleotide differences, implying that the two strains were of the same species. The cellular fatty acid profiles of the two strains were also very similar, with iso-C(15 : 0), iso-C(16 : 0), C(16 : 0), iso-C(17 : 0) and anteiso-C(17 : 0) as the major components. The G + C content of strain TM1(T) was 38.7 %. On the basis of phenotypic and molecular data, strains TM1(T) and TM5 represent a novel species of the genus Bacillus, for which the name Bacillus alveayuensis sp. nov. is proposed. The type strain is TM1(T) (= KCTC 10634(T) = JCM 12523(T)).
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
May
pubmed:issn
1466-5026
pubmed:author
pubmed:issnType
Print
pubmed:volume
55
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
1211-5
pubmed:dateRevised
2008-11-21
pubmed:meshHeading
pubmed-meshheading:15879257-Bacillus, pubmed-meshheading:15879257-Bacterial Typing Techniques, pubmed-meshheading:15879257-Base Composition, pubmed-meshheading:15879257-DNA, Bacterial, pubmed-meshheading:15879257-DNA, Ribosomal, pubmed-meshheading:15879257-Fatty Acids, pubmed-meshheading:15879257-Genes, rRNA, pubmed-meshheading:15879257-Gentian Violet, pubmed-meshheading:15879257-Geologic Sediments, pubmed-meshheading:15879257-Growth Inhibitors, pubmed-meshheading:15879257-Hot Temperature, pubmed-meshheading:15879257-Molecular Sequence Data, pubmed-meshheading:15879257-Movement, pubmed-meshheading:15879257-Pacific Ocean, pubmed-meshheading:15879257-Phenazines, pubmed-meshheading:15879257-Phylogeny, pubmed-meshheading:15879257-RNA, Bacterial, pubmed-meshheading:15879257-RNA, Ribosomal, 16S, pubmed-meshheading:15879257-Sequence Analysis, DNA, pubmed-meshheading:15879257-Sodium Chloride, pubmed-meshheading:15879257-Spores, Bacterial, pubmed-meshheading:15879257-Water Microbiology
pubmed:year
2005
pubmed:articleTitle
Bacillus alveayuensis sp. nov., a thermophilic bacterium isolated from deep-sea sediments of the Ayu Trough.
pubmed:affiliation
Microbiology Laboratory, Korea Ocean Research and Development Institute, Republic of Korea.
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't