15608213

Source:http://linkedlifedata.com/resource/pubmed/id/15608213

Download in:

Switch to

Custom View

Named Graph Language Inference

Statements in which the resource exists as a subject.
Predicate	Object
rdf:type	pubmed:Citation
lifeskim:mentions	umls-concept:C0162769, umls-concept:C0242356, umls-concept:C0600510, umls-concept:C1337108, umls-concept:C1420459
pubmed:issue	Database issue
pubmed:dateCreated	2004-12-20
pubmed:abstractText	The Diatom EST database provides integrated access to expressed sequence tag (EST) data from two eukaryotic microalgae of the class Bacillariophyceae, Phaeodactylum tricornutum and Thalassiosira pseudonana. The database currently contains sequences of close to 30,000 ESTs organized into PtDB, the P.tricornutum EST database, and TpDB, the T.pseudonana EST database. The EST sequences were clustered and assembled into a non-redundant set for each organism, and these non-redundant sequences were then subjected to automated annotation using similarity searches against protein and domain databases. EST sequences, clusters of contiguous sequences, their annotation and analysis with reference to the publicly available databases, and a codon usage table derived from a subset of sequences from PtDB and TpDB can all be accessed in the Diatom EST Database. The underlying RDBMS enables queries over the raw and annotated EST data and retrieval of information through a user-friendly web interface, with options to perform keyword and BLAST searches. The EST data can also be retrieved based on Pfam domains, Cluster of Orthologous Groups (COG) and Gene Ontologies (GO) assigned to them by similarity searches. The Database is available at http://avesthagen.sznbowler.com.
pubmed:commentsCorrections	http://linkedlifedata.com/resource/pubmed/commentcorrection/15608213-10508846, http://linkedlifedata.com/resource/pubmed/commentcorrection/15608213-10802651, http://linkedlifedata.com/resource/pubmed/commentcorrection/15608213-11125040, http://linkedlifedata.com/resource/pubmed/commentcorrection/15608213-11524378, http://linkedlifedata.com/resource/pubmed/commentcorrection/15608213-12114555, http://linkedlifedata.com/resource/pubmed/commentcorrection/15608213-12221969, http://linkedlifedata.com/resource/pubmed/commentcorrection/15608213-12520028, http://linkedlifedata.com/resource/pubmed/commentcorrection/15608213-14681378, http://linkedlifedata.com/resource/pubmed/commentcorrection/15608213-15459382, http://linkedlifedata.com/resource/pubmed/commentcorrection/15608213-2231712, http://linkedlifedata.com/resource/pubmed/commentcorrection/15608213-7984417
pubmed:language	eng
pubmed:journal	http://linkedlifedata.com/resource/pubmed/journal/0411011
pubmed:citationSubset	IM
pubmed:chemical	http://linkedlifedata.com/resource/pubmed/chemical/DNA, Algal
pubmed:status	MEDLINE
pubmed:month	Jan
pubmed:issn	1362-4962
pubmed:author	pubmed-author:BowlerChrisC, pubmed-author:GollJohannesJ, pubmed-author:KrishnasamySS, pubmed-author:MaheswariUmaU, pubmed-author:MontsantAntonA, pubmed-author:PatellVilloo MorawalaVM, pubmed-author:RajyashriK RKR
pubmed:issnType	Electronic
pubmed:day	1
pubmed:volume	33
pubmed:owner	NLM
pubmed:authorsComplete	Y
pubmed:pagination	D344-7
pubmed:dateRevised	2009-11-18
pubmed:meshHeading	pubmed-meshheading:15608213-DNA, Algal, pubmed-meshheading:15608213-Databases, Nucleic Acid, pubmed-meshheading:15608213-Diatoms, pubmed-meshheading:15608213-Expressed Sequence Tags, pubmed-meshheading:15608213-Sequence Analysis, DNA, pubmed-meshheading:15608213-Systems Integration
pubmed:year	2005
pubmed:articleTitle	The Diatom EST Database.
pubmed:affiliation	Avestha Gengraine Technologies Pvt. Ltd, Discoverer, 9th Floor, International Technology Park, Whitefield Road, Bangalore 560066, India.
pubmed:publicationType	Journal Article, Research Support, Non-U.S. Gov't