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pubmed-article:12535524pubmed:abstractTextCrystal structures of tRNA mimics complexed with the large ribosomal subunit of Deinococcus radiodurans indicate that remote interactions determine the precise orientation of tRNA in the peptidyl-transferase center (PTC). The PTC tolerates various orientations of puromycin derivatives and its flexibility allows the conformational rearrangements required for peptide-bond formation. Sparsomycin binds to A2602 and alters the PTC conformation. H69, the intersubunit-bridge connecting the PTC and decoding site, may also participate in tRNA placement and translocation. A spiral rotation of the 3' end of the A-site tRNA around a 2-fold axis of symmetry identified within the PTC suggests a unified ribosomal machinery for peptide-bond formation, A-to-P-site translocation, and entrance of nascent proteins into the exit tunnel. Similar 2-fold related regions, detected in all known structures of large ribosomal subunits, indicate the universality of this mechanism.lld:pubmed
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pubmed-article:12535524pubmed:articleTitleStructural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression.lld:pubmed
pubmed-article:12535524pubmed:affiliationDepartment of Structural Biology, Weizmann Institute, 76100 Rehovot, Israel.lld:pubmed
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pubmed-article:12535524pubmed:publicationTypeResearch Support, U.S. Gov't, P.H.S.lld:pubmed
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